Non-Coding RNA Search

Ss1.1-Lym1-jns71_F11.f.5

Sequence:


               
               AAAACGTGAATCAGTCCCTGTTGGAACTGCACAAATTGGCCATTGACAAAAATGCCCCCC
ACTTGTGTGATTTCATTGAGACGCATTACTTGAATGAGCAGGTGAAACCCATCAAAGAAT
TGGGTGCCCCCATTACCAACTTGCACAGAATGGGGGCCCCCAAGTATGGCATGCCCAAGT
ATTTTTTTGACAAGCCCCCCTTGGGGACCAGTAAAAGTTAACCCTTAAGCTGCCCTCCCG
AAAACACGGGGTGCCCCCCTTGGTCCCCAAACCAGTGCATGCATGTTTGGGGTTCCCGTC
CCCTTTTTTATAAGTCCTCCCAGAACATTTATTTCAGTTCTTTCCTTAGTGTCCCATTCC
TTCAAATAAAGTAATTTGGTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACGTGAATCAGTCCCTGTTGGAACTGCACAAATTGGCCATTGACAAAAATGCCCCCC
ACTTGTGTGATTTCATTGAGACGCATTACTTGAATGAGCAGGTGAAACCCATCAAAGAAT
TGGGTGCCCCCATTACCAACTTGCACAGAATGGGGGCCCCCAAGTATGGCATGCCCAAGT
ATTTTTTTGACAAGCCCCCCTTGGGGACCAGTAAAAGTTAACCCTTAAGCTGCCCTCCCG
AAAACACGGGGTGCCCCCCTTGGTCCCCAAACCAGTGCATGCATGTTTGGGGTTCCCGTC
CCCTTTTTTATAAGTCCTCCCAGAACATTTATTTCAGTTCTTTCCTTAGTGTCCCATTCC
TTCAAATAAAGTAATTTGGTCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|89197|pir||S06905

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|89197|pir||S06905

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               55-174, - strand, RNAz p=0.521356

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-174, - strand, RNAz p=0.521356

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-384, gnl|bosTau2|chr12 (48464556-48464931)
               

               
               6-384, gnl|canFam2|chr11 (42065999-42066698)
               

               
               6-384, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               6-384, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               6-384, gnl|Hg17|chr13 (22168383-22168001)
               

               
               6-384, gnl|hg17|chr4 (123051116-123051714)
               

               
               6-384, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               6-384, gnl|Mm7|chr19 (9664754-9665217)
               

               
               6-384, gnl|mm7|chrX (86131699-86131045)
               

               
               6-384, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               6-384, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               6-384, gnl|panTro1|chr3 (139885709-139886307)
               

               
               6-384, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               6-384, gnl|rn3|chr1 (24188888-24189575)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-384, gnl|bosTau2|chr12 (48464556-48464931)
               

               
               6-384, gnl|canFam2|chr11 (42065999-42066698)
               

               
               6-384, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               6-384, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               6-384, gnl|Hg17|chr13 (22168383-22168001)
               

               
               6-384, gnl|hg17|chr4 (123051116-123051714)
               

               
               6-384, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               6-384, gnl|Mm7|chr19 (9664754-9665217)
               

               
               6-384, gnl|mm7|chrX (86131699-86131045)
               

               
               6-384, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               6-384, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               6-384, gnl|panTro1|chr3 (139885709-139886307)
               

               
               6-384, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               6-384, gnl|rn3|chr1 (24188888-24189575)

	6-384, gnl\|bosTau2\|chr12 (48464556-48464931)
	6-384, gnl\|canFam2\|chr11 (42065999-42066698)
	6-384, gnl\|dasNov1\|scaffold_47393 (39904-40518)
	6-384, gnl\|echTel1\|scaffold_197242 (2413-3082)
	6-384, gnl\|Hg17\|chr13 (22168383-22168001)
	6-384, gnl\|hg17\|chr4 (123051116-123051714)
	6-384, gnl\|loxAfr1\|scaffold_923 (112079-111443)
	6-384, gnl\|Mm7\|chr19 (9664754-9665217)
	6-384, gnl\|mm7\|chrX (86131699-86131045)
	6-384, gnl\|monDom2\|scaffold_20 (964275-963592)
	6-384, gnl\|oryCun1\|scaffold_200015 (3143-3829)
	6-384, gnl\|panTro1\|chr3 (139885709-139886307)
	6-384, gnl\|rheMac2\|chr5 (114138278-114138883)
	6-384, gnl\|rn3\|chr1 (24188888-24189575)