Ss1.1-Lym2-sn39_H07.f.5
|
TTCCTTCTGCCACATTGCTCTGCTGCAATGGGCAATCATTGTCTCCTTTGCTGATGACAT
CTCTGGTGTCTAGGAACAGAAGGGAGAATCCATCTGTTGGCAGGAAGAGAAAAAAGAAGG
TACACAAGGTGTCCTATTTGTTACTGGGAGAGTGGTGTTAAAGTTTCCAATGATTCTGTG
CAGCAAAACAAGGAAAACATGTAACAAACAGACCAACCCAAAATAGCTTTGTTTACTAAT
TCATCCTTCACACCTGGAACATTCCTCAGTGTAAAGCTGTGGCATATGGCAGGTTAATCA
TTCTTCCCAAGTTGGAGCAGGCTGGTCAGGAGTCCAGGCAGCCTACAGCTACCTTGGAAC
ATAATCAGTCCCCGTTTGTCTGCATTTACAAAATAGCTGCACAGCAGTATGCCTTTGATA
AATACTATAGTAGTACATGGTCTGCATTGGTTGAATCCATGGATGCCAAACCCTGGGATA
TAGTAGAACCCAAAGACAGAAGCCCAACTATAAGTTACAATTTCCCTCCTTCTCATGCCC
TGTCATATAAAGTCAGTTCAAGATCCACTTTTCAGCCACAGCTGACAGGGCCCAGGTCCC
TGTGTATCTACCAGACCCTATGACCATTGCCTGTGAGTAGAGCTTCTGATGGTCCAGCTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCCTTCTGCCACATTGCTCTGCTGCAATGGGCAATCATTGTCTCCTTTGCTGATGACAT
CTCTGGTGTCTAGGAACAGAAGGGAGAATCCATCTGTTGGCAGGAAGAGAAAAAAGAAGG
TACACAAGGTGTCCTATTTGTTACTGGGAGAGTGGTGTTAAAGTTTCCAATGATTCTGTG
CAGCAAAACAAGGAAAACATGTAACAAACAGACCAACCCAAAATAGCTTTGTTTACTAAT
TCATCCTTCACACCTGGAACATTCCTCAGTGTAAAGCTGTGGCATATGGCAGGTTAATCA
TTCTTCCCAAGTTGGAGCAGGCTGGTCAGGAGTCCAGGCAGCCTACAGCTACCTTGGAAC
ATAATCAGTCCCCGTTTGTCTGCATTTACAAAATAGCTGCACAGCAGTATGCCTTTGATA
AATACTATAGTAGTACATGGTCTGCATTGGTTGAATCCATGGATGCCAAACCCTGGGATA
TAGTAGAACCCAAAGACAGAAGCCCAACTATAAGTTACAATTTCCCTCCTTCTCATGCCC
TGTCATATAAAGTCAGTTCAAGATCCACTTTTCAGCCACAGCTGACAGGGCCCAGGTCCC
TGTGTATCTACCAGACCCTATGACCATTGCCTGTGAGTAGAGCTTCTGATGGTCCAGCTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
276-418, gnl|bosTau2|chr23 (27836870-27836728) |
|
276-418, gnl|canFam2|chr35 (24558403-24558885) |
|
276-418, gnl|hg17|chr6 (23442636-23443131) |
|
276-418, gnl|Hg17|chr6 (23442683-23442825) |
|
276-418, gnl|mm7|chr13 (25398257-25397695) |
|
276-418, gnl|Mm7|chr13 (25398215-25398073) |
|
276-418, gnl|monDom2|scaffold_3 (113445505-113446035) |
|
276-418, gnl|oryCun1|scaffold_179150 (41885-41410) |
|
276-418, gnl|panTro1|chr5 (23861772-23862266) |
|
276-418, gnl|rheMac2|chr4 (23362244-23362755) |
| |
|
514-652, gnl|bosTau2|chr23 (27836636-27836499) |
|
514-652, gnl|canFam2|chr35 (24558403-24558885) |
|
514-652, gnl|hg17|chr6 (23442636-23443131) |
|
514-652, gnl|Hg17|chr6 (23442922-23443060) |
|
514-652, gnl|mm7|chr13 (25398257-25397695) |
|
514-652, gnl|Mm7|chr13 (25397899-25397757) |
|
514-652, gnl|monDom2|scaffold_3 (113445505-113446035) |
|
514-652, gnl|oryCun1|scaffold_179150 (41885-41410) |
|
514-652, gnl|panTro1|chr5 (23861772-23862266) |
|
514-652, gnl|rheMac2|chr4 (23362244-23362755) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
276-418, gnl|bosTau2|chr23 (27836870-27836728) |
|
276-418, gnl|canFam2|chr35 (24558403-24558885) |
|
276-418, gnl|hg17|chr6 (23442636-23443131) |
|
276-418, gnl|Hg17|chr6 (23442683-23442825) |
|
276-418, gnl|mm7|chr13 (25398257-25397695) |
|
276-418, gnl|Mm7|chr13 (25398215-25398073) |
|
276-418, gnl|monDom2|scaffold_3 (113445505-113446035) |
|
276-418, gnl|oryCun1|scaffold_179150 (41885-41410) |
|
276-418, gnl|panTro1|chr5 (23861772-23862266) |
|
276-418, gnl|rheMac2|chr4 (23362244-23362755) |
| |
|
514-652, gnl|bosTau2|chr23 (27836636-27836499) |
|
514-652, gnl|canFam2|chr35 (24558403-24558885) |
|
514-652, gnl|hg17|chr6 (23442636-23443131) |
|
514-652, gnl|Hg17|chr6 (23442922-23443060) |
|
514-652, gnl|mm7|chr13 (25398257-25397695) |
|
514-652, gnl|Mm7|chr13 (25397899-25397757) |
|
514-652, gnl|monDom2|scaffold_3 (113445505-113446035) |
|
514-652, gnl|oryCun1|scaffold_179150 (41885-41410) |
|
514-652, gnl|panTro1|chr5 (23861772-23862266) |
|
514-652, gnl|rheMac2|chr4 (23362244-23362755) |
