Non-Coding RNA Search

Ss1.1-Lym2-sn53_A09.f.5

Sequence:


               
               ATGAGGAGAGGGAACATGTTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAA
TCTTCCTTCAGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCA
TGGAATGTGCGCTGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAAC
TGGCCACTGACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATG
AGCAGGTGAAACCCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGGG
CCCCCGAGTATGGCATGGCCGAGTATCTTTTTGACAAGCACCCCTTGGGGACCAGTGAGA
GTTAAGCCTTAAGCTGGCCTCCCGAAGACACGGGGTGACCCCCCTGGTCACCAAACCAGT
GCATGCATGTTTCGGGTTCCCGTCCCCTTTTCTATAAGTCCTACCAGAACATCTACTTCA
GTTCTTTCCTTAGTGTACCATTCCTTCAAATAAAGTAATTTGGTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAGGAGAGGGAACATGTTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAA
TCTTCCTTCAGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCA
TGGAATGTGCGCTGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAAC
TGGCCACTGACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATG
AGCAGGTGAAACCCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGGG
CCCCCGAGTATGGCATGGCCGAGTATCTTTTTGACAAGCACCCCTTGGGGACCAGTGAGA
GTTAAGCCTTAAGCTGGCCTCCCGAAGACACGGGGTGACCCCCCTGGTCACCAAACCAGT
GCATGCATGTTTCGGGTTCCCGTCCCCTTTTCTATAAGTCCTACCAGAACATCTACTTCA
GTTCTTTCCTTAGTGTACCATTCCTTCAAATAAAGTAATTTGGTCCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2136977|pir||I46710

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2136977|pir||I46710

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-313, - strand, RNAz p=0.995752

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-313, - strand, RNAz p=0.995752

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-528, gnl|bosTau2|chr12 (48464407-48464931)
               

               
               1-528, gnl|canFam2|chr11 (42065999-42066698)
               

               
               1-528, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               1-528, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               1-528, gnl|Hg17|chr13 (22168532-22168001)
               

               
               1-528, gnl|hg17|chr4 (123051116-123051714)
               

               
               1-528, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               1-528, gnl|Mm7|chr19 (9664373-9665217)
               

               
               1-528, gnl|mm7|chrX (86131699-86131045)
               

               
               1-528, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               1-528, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               1-528, gnl|panTro1|chr3 (139885709-139886307)
               

               
               1-528, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               1-528, gnl|rn3|chr1 (24188888-24189575)
               


               
               20-339, gnl|bosTau2|chr10 (27427394-27427709)
               

               
               20-339, gnl|Hg17|chr7 (45810725-45810399)
               

               
               20-339, gnl|Mm7|chr4 (124949123-124949466)
               


               
               42-334, gnl|bosTau2|chr10 (49576720-49577014)
               

               
               42-334, gnl|Hg17|chr7 (45810703-45810390)
               

               
               42-334, gnl|Mm7|chr4 (124949145-124949475)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr12 (48464407-48464931)
               

               
               1-528, gnl|canFam2|chr11 (42065999-42066698)
               

               
               1-528, gnl|dasNov1|scaffold_47393 (39904-40518)
               

               
               1-528, gnl|echTel1|scaffold_197242 (2413-3082)
               

               
               1-528, gnl|Hg17|chr13 (22168532-22168001)
               

               
               1-528, gnl|hg17|chr4 (123051116-123051714)
               

               
               1-528, gnl|loxAfr1|scaffold_923 (112079-111443)
               

               
               1-528, gnl|Mm7|chr19 (9664373-9665217)
               

               
               1-528, gnl|mm7|chrX (86131699-86131045)
               

               
               1-528, gnl|monDom2|scaffold_20 (964275-963592)
               

               
               1-528, gnl|oryCun1|scaffold_200015 (3143-3829)
               

               
               1-528, gnl|panTro1|chr3 (139885709-139886307)
               

               
               1-528, gnl|rheMac2|chr5 (114138278-114138883)
               

               
               1-528, gnl|rn3|chr1 (24188888-24189575)
               


               
               20-339, gnl|bosTau2|chr10 (27427394-27427709)
               

               
               20-339, gnl|Hg17|chr7 (45810725-45810399)
               

               
               20-339, gnl|Mm7|chr4 (124949123-124949466)
               


               
               42-334, gnl|bosTau2|chr10 (49576720-49577014)
               

               
               42-334, gnl|Hg17|chr7 (45810703-45810390)
               

               
               42-334, gnl|Mm7|chr4 (124949145-124949475)

	1-528, gnl\|bosTau2\|chr12 (48464407-48464931)
	1-528, gnl\|canFam2\|chr11 (42065999-42066698)
	1-528, gnl\|dasNov1\|scaffold_47393 (39904-40518)
	1-528, gnl\|echTel1\|scaffold_197242 (2413-3082)
	1-528, gnl\|Hg17\|chr13 (22168532-22168001)
	1-528, gnl\|hg17\|chr4 (123051116-123051714)
	1-528, gnl\|loxAfr1\|scaffold_923 (112079-111443)
	1-528, gnl\|Mm7\|chr19 (9664373-9665217)
	1-528, gnl\|mm7\|chrX (86131699-86131045)
	1-528, gnl\|monDom2\|scaffold_20 (964275-963592)
	1-528, gnl\|oryCun1\|scaffold_200015 (3143-3829)
	1-528, gnl\|panTro1\|chr3 (139885709-139886307)
	1-528, gnl\|rheMac2\|chr5 (114138278-114138883)
	1-528, gnl\|rn3\|chr1 (24188888-24189575)

	20-339, gnl\|bosTau2\|chr10 (27427394-27427709)
	20-339, gnl\|Hg17\|chr7 (45810725-45810399)
	20-339, gnl\|Mm7\|chr4 (124949123-124949466)

	42-334, gnl\|bosTau2\|chr10 (49576720-49577014)
	42-334, gnl\|Hg17\|chr7 (45810703-45810390)
	42-334, gnl\|Mm7\|chr4 (124949145-124949475)