Non-Coding RNA Search

Ss1.1-MPL-MPL384_10_P07.5

Sequence:


               
               GGACCAGAGCAGCAGCTGCCGCCAGACACAATCTCACCATGAGCGGCCACAACAACTCCG
AGCTCCTCGTCCTCTGCAGCTCCGGCCAGCTGTTCCTGCAGCCCCTCTGGGACCACCTGA
AGACCTGGGAGACCCTCATCCAGTCGCCCTTCTTCCCAGTCTTCTTCTCCATCACCACCT
ACTTGGGCTTCTGCCTGCCCTTCGTGGTACTGGATGTCTTGTGCCCGTGGGTGCCCGCGC
TGCGGCGCTACAAGATCCACCCGGACTTCTCGCCGTCGGTGTGGCAGCTGCTGCCCTGCC
TGGGGCTGACGCTCTACCAGCATGTGGTGTTCGTGTTCCCGATGACTCTGTTGCACTGGG
CAGCAAGCCCGGTTCTCCTGCCCCCAGAAGCCCCCGAGCTGCTCCAGCTGGTGCGCCACA
TCGTGCTGTGCCTGCTGCTCTTCGACACCGAATTCTTCATCTGGCATGTGCTGCATCACA
AAGTGCCTTGGCTGTACCGGACCTTCCACAAGATGCACCACCAGAACTCGTCCTCGTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCAGAGCAGCAGCTGCCGCCAGACACAATCTCACCATGAGCGGCCACAACAACTCCG
AGCTCCTCGTCCTCTGCAGCTCCGGCCAGCTGTTCCTGCAGCCCCTCTGGGACCACCTGA
AGACCTGGGAGACCCTCATCCAGTCGCCCTTCTTCCCAGTCTTCTTCTCCATCACCACCT
ACTTGGGCTTCTGCCTGCCCTTCGTGGTACTGGATGTCTTGTGCCCGTGGGTGCCCGCGC
TGCGGCGCTACAAGATCCACCCGGACTTCTCGCCGTCGGTGTGGCAGCTGCTGCCCTGCC
TGGGGCTGACGCTCTACCAGCATGTGGTGTTCGTGTTCCCGATGACTCTGTTGCACTGGG
CAGCAAGCCCGGTTCTCCTGCCCCCAGAAGCCCCCGAGCTGCTCCAGCTGGTGCGCCACA
TCGTGCTGTGCCTGCTGCTCTTCGACACCGAATTCTTCATCTGGCATGTGCTGCATCACA
AAGTGCCTTGGCTGTACCGGACCTTCCACAAGATGCACCACCAGAACTCGTCCTCGTTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55634141|ref|XP_507901.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55634141|ref|XP_507901.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-277, - strand, RNAz p=0.978627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-277, - strand, RNAz p=0.978627

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-540, gnl|bosTau2|chr26 (6546764-6546230)
               

               
               1-540, gnl|canFam2|chr26 (41949880-41950539)
               

               
               1-540, gnl|danRer3|chr12 (9726534-9727193)
               

               
               1-540, gnl|dasNov1|scaffold_3699 (39347-40005)
               

               
               1-540, gnl|echTel1|scaffold_325375 (55644-56303)
               

               
               1-540, gnl|fr1|chrUn (212606179-212605517)
               

               
               1-540, gnl|galGal2|chr6 (18489751-18490410)
               

               
               1-540, gnl|hg17|chr10 (90956243-90956902)
               

               
               1-540, gnl|Hg17|chr10 (90957070-90956528)
               

               
               1-540, gnl|loxAfr1|scaffold_4018 (50320-49661)
               

               
               1-540, gnl|mm7|chr19 (34175644-34176303)
               

               
               1-540, gnl|Mm7|chr19 (34176468-34175929)
               

               
               1-540, gnl|oryCun1|scaffold_189846 (4367-3708)
               

               
               1-540, gnl|panTro1|chr8 (92650622-92651281)
               

               
               1-540, gnl|rheMac2|chr9 (88797826-88798485)
               

               
               1-540, gnl|rn3|chr1 (238621450-238622109)
               

               
               1-540, gnl|tetNig1|chrUn_random (1572781-1573443)
               

               
               1-540, gnl|xenTro1|scaffold_94 (2032488-2033147)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr26 (6546764-6546230)
               

               
               1-540, gnl|canFam2|chr26 (41949880-41950539)
               

               
               1-540, gnl|danRer3|chr12 (9726534-9727193)
               

               
               1-540, gnl|dasNov1|scaffold_3699 (39347-40005)
               

               
               1-540, gnl|echTel1|scaffold_325375 (55644-56303)
               

               
               1-540, gnl|fr1|chrUn (212606179-212605517)
               

               
               1-540, gnl|galGal2|chr6 (18489751-18490410)
               

               
               1-540, gnl|hg17|chr10 (90956243-90956902)
               

               
               1-540, gnl|Hg17|chr10 (90957070-90956528)
               

               
               1-540, gnl|loxAfr1|scaffold_4018 (50320-49661)
               

               
               1-540, gnl|mm7|chr19 (34175644-34176303)
               

               
               1-540, gnl|Mm7|chr19 (34176468-34175929)
               

               
               1-540, gnl|oryCun1|scaffold_189846 (4367-3708)
               

               
               1-540, gnl|panTro1|chr8 (92650622-92651281)
               

               
               1-540, gnl|rheMac2|chr9 (88797826-88798485)
               

               
               1-540, gnl|rn3|chr1 (238621450-238622109)
               

               
               1-540, gnl|tetNig1|chrUn_random (1572781-1573443)
               

               
               1-540, gnl|xenTro1|scaffold_94 (2032488-2033147)

	1-540, gnl\|bosTau2\|chr26 (6546764-6546230)
	1-540, gnl\|canFam2\|chr26 (41949880-41950539)
	1-540, gnl\|danRer3\|chr12 (9726534-9727193)
	1-540, gnl\|dasNov1\|scaffold_3699 (39347-40005)
	1-540, gnl\|echTel1\|scaffold_325375 (55644-56303)
	1-540, gnl\|fr1\|chrUn (212606179-212605517)
	1-540, gnl\|galGal2\|chr6 (18489751-18490410)
	1-540, gnl\|hg17\|chr10 (90956243-90956902)
	1-540, gnl\|Hg17\|chr10 (90957070-90956528)
	1-540, gnl\|loxAfr1\|scaffold_4018 (50320-49661)
	1-540, gnl\|mm7\|chr19 (34175644-34176303)
	1-540, gnl\|Mm7\|chr19 (34176468-34175929)
	1-540, gnl\|oryCun1\|scaffold_189846 (4367-3708)
	1-540, gnl\|panTro1\|chr8 (92650622-92651281)
	1-540, gnl\|rheMac2\|chr9 (88797826-88798485)
	1-540, gnl\|rn3\|chr1 (238621450-238622109)
	1-540, gnl\|tetNig1\|chrUn_random (1572781-1573443)
	1-540, gnl\|xenTro1\|scaffold_94 (2032488-2033147)