Non-Coding RNA Search

Ss1.1-Mixc-0025b07.5

Sequence:


               
               TGTTTCTTCCAATATTGACGTTCCTCCAGCAAGGAAATCTTCAGAGGAACTAGACATGGA
CAAGGTGACAGCAGCAATGGTACTGACCAGCTTGTCCACCAGCCCTTTGGTTCGGAGCCC
TCCTGTGCGACAGAATGAGGGCCTGAGTGGATCCTGGAAGGAGGGGGGCGGCGTGCCTTC
CAGCACCAGCAGCAGCGGCTACTGGAGCTGGAGCGCCCCCAGCGACCAGTCCAACCCGTC
CACGCCGTCGCCGCCCCTGTCCGCCGACAGCTTCAAGCCCTTCCGCAGCCCCGCGCCCAC
GGACGACGGCATCGACGAGGCGGAGGCCAGCAACCTTCTCTTTGACGAGCCCATTCCCAG
GAAACGAAAGAACTCCATGAAGGTGATGTTCAAATGCCTCTGGAAAAACTGTGGGAAGGT
GCTGAGCACTGCCGCGGGTATCCAGAAGCACATCCGGACCATTCATCTTGGGCGTGTTGG
GGAATCTGACTACAGTGATGGAGAAGAAGACTTTTACTACACTGAGATCAAGCTCAACAC
AGACTCGGTGGCAGACGGACTGAGCAGCCTGGCCCCGGTTTCGCCCTCCCAGTCCCTGGC
TTCACCCCCTACCTTCCCCGTCCCAGATTCCAGCCGAATAGAAACTCCTTGTGCCAAAAG
CGAGACAAAATTGATGACACCCTTGAGCCGCTCTGCTCCCACCACCCTCTACCTCGTGCA
CACCGACCACGCTTATCAGGCCACACCCCCCGTGACCATTCCGGGATCGGCCAAGTTCAC
CCCCAATGGCAGTAGCTTCAGCATTTCTTGGCAGTCGCCTCCAGTTACCTTCACGGGCAT
TCCTGTGTCACCAACTCACAGTCACCCAGTGGGCACAGGAGAGCAGAGACAGCACACTCA
CACCGTCTTGTCGTCCCCGCCCAGAGGGACAGTCAGCCTGAGGAAGCCCAGGGGAGAGGG
CAAAAAGTGCCGCAAGGTGTACGGCATGGAGAACCGCGACATGTGGTGCACCGCCTGCCG
CTGGAAGAAGGCCTGCCAGCGGTTCACTGACTGAAGCCCCGGCCACCCGCCGGCGGGGCT
GGCGTCCCACACACTCCTGCCCTCGCCTTCCGCCGAGGGTTCTGGAAAGCGCTTTTCCTT
CTGAACAAAACACACTTGAAGCCCAGGAAAAGCACTTCCAGGAAGCTTGGTGAAATTACA
GCAAAAACATTCAAAATGAAAAGGTCACCGCTCTTACTGTTCTTGCTGAGAATCCATCCG
ACAGCAGCTGGAACTCTTTTTTTCTTCCTTGAAAAGTAAAGTCAACTGTTTTTTTTCTGT
TTGTCTTGGTCTGAAAACTGTGGGCTGCTGTAGCCATTGAACCAATCAAGCCCATTTTAC
CTAGAAAGGAGGCCTGTTTTGATAATGCCCTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCTTCCAATATTGACGTTCCTCCAGCAAGGAAATCTTCAGAGGAACTAGACATGGA
CAAGGTGACAGCAGCAATGGTACTGACCAGCTTGTCCACCAGCCCTTTGGTTCGGAGCCC
TCCTGTGCGACAGAATGAGGGCCTGAGTGGATCCTGGAAGGAGGGGGGCGGCGTGCCTTC
CAGCACCAGCAGCAGCGGCTACTGGAGCTGGAGCGCCCCCAGCGACCAGTCCAACCCGTC
CACGCCGTCGCCGCCCCTGTCCGCCGACAGCTTCAAGCCCTTCCGCAGCCCCGCGCCCAC
GGACGACGGCATCGACGAGGCGGAGGCCAGCAACCTTCTCTTTGACGAGCCCATTCCCAG
GAAACGAAAGAACTCCATGAAGGTGATGTTCAAATGCCTCTGGAAAAACTGTGGGAAGGT
GCTGAGCACTGCCGCGGGTATCCAGAAGCACATCCGGACCATTCATCTTGGGCGTGTTGG
GGAATCTGACTACAGTGATGGAGAAGAAGACTTTTACTACACTGAGATCAAGCTCAACAC
AGACTCGGTGGCAGACGGACTGAGCAGCCTGGCCCCGGTTTCGCCCTCCCAGTCCCTGGC
TTCACCCCCTACCTTCCCCGTCCCAGATTCCAGCCGAATAGAAACTCCTTGTGCCAAAAG
CGAGACAAAATTGATGACACCCTTGAGCCGCTCTGCTCCCACCACCCTCTACCTCGTGCA
CACCGACCACGCTTATCAGGCCACACCCCCCGTGACCATTCCGGGATCGGCCAAGTTCAC
CCCCAATGGCAGTAGCTTCAGCATTTCTTGGCAGTCGCCTCCAGTTACCTTCACGGGCAT
TCCTGTGTCACCAACTCACAGTCACCCAGTGGGCACAGGAGAGCAGAGACAGCACACTCA
CACCGTCTTGTCGTCCCCGCCCAGAGGGACAGTCAGCCTGAGGAAGCCCAGGGGAGAGGG
CAAAAAGTGCCGCAAGGTGTACGGCATGGAGAACCGCGACATGTGGTGCACCGCCTGCCG
CTGGAAGAAGGCCTGCCAGCGGTTCACTGACTGAAGCCCCGGCCACCCGCCGGCGGGGCT
GGCGTCCCACACACTCCTGCCCTCGCCTTCCGCCGAGGGTTCTGGAAAGCGCTTTTCCTT
CTGAACAAAACACACTTGAAGCCCAGGAAAAGCACTTCCAGGAAGCTTGGTGAAATTACA
GCAAAAACATTCAAAATGAAAAGGTCACCGCTCTTACTGTTCTTGCTGAGAATCCATCCG
ACAGCAGCTGGAACTCTTTTTTTCTTCCTTGAAAAGTAAAGTCAACTGTTTTTTTTCTGT
TTGTCTTGGTCTGAAAACTGTGGGCTGCTGTAGCCATTGAACCAATCAAGCCCATTTTAC
CTAGAAAGGAGGCCTGTTTTGATAATGCCCTTTCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61828881|ref|XP_590898.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828881|ref|XP_590898.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               124-283, - strand, RNAz p=0.953049
               

               
               937-1054, + strand, RNAz p=0.880136

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-283, - strand, RNAz p=0.953049
               

               
               937-1054, + strand, RNAz p=0.880136

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               124-370, gnl|bosTau2|chr14 (24861455-24861210)
               

               
               124-370, gnl|Hg17|chr8 (81762259-81762016)
               

               
               124-370, gnl|Mm7|chr3 (9477461-9477224)
               


               
               468-740, gnl|bosTau2|chr14 (24835444-24835172)
               

               
               468-740, gnl|Hg17|chr8 (81739876-81739604)
               

               
               468-740, gnl|Mm7|chr3 (9453878-9453606)
               


               
               937-1054, gnl|bosTau2|chr13 (35319258-35319141)
               

               
               937-1054, gnl|Hg17|chr20 (61844668-61844787)
               

               
               937-1054, gnl|Mm7|chr2 (181887999-181888111)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-370, gnl|bosTau2|chr14 (24861455-24861210)
               

               
               124-370, gnl|Hg17|chr8 (81762259-81762016)
               

               
               124-370, gnl|Mm7|chr3 (9477461-9477224)
               


               
               468-740, gnl|bosTau2|chr14 (24835444-24835172)
               

               
               468-740, gnl|Hg17|chr8 (81739876-81739604)
               

               
               468-740, gnl|Mm7|chr3 (9453878-9453606)
               


               
               937-1054, gnl|bosTau2|chr13 (35319258-35319141)
               

               
               937-1054, gnl|Hg17|chr20 (61844668-61844787)
               

               
               937-1054, gnl|Mm7|chr2 (181887999-181888111)

	124-283, - strand, RNAz p=0.953049
	937-1054, + strand, RNAz p=0.880136

	124-370, gnl\|bosTau2\|chr14 (24861455-24861210)
	124-370, gnl\|Hg17\|chr8 (81762259-81762016)
	124-370, gnl\|Mm7\|chr3 (9477461-9477224)

	468-740, gnl\|bosTau2\|chr14 (24835444-24835172)
	468-740, gnl\|Hg17\|chr8 (81739876-81739604)
	468-740, gnl\|Mm7\|chr3 (9453878-9453606)

	937-1054, gnl\|bosTau2\|chr13 (35319258-35319141)
	937-1054, gnl\|Hg17\|chr20 (61844668-61844787)
	937-1054, gnl\|Mm7\|chr2 (181887999-181888111)