Non-Coding RNA Search

Ss1.1-Mixc-0025c02.5

Sequence:


               
               GCAGCGGGCTGGGACCCACGCGGCGCCGCGGCCCACCTGGCCTGCAGCGCTCCCACCCCC
GGCGGCAGCGGCGGCGGCGGCGGCACGATGCCCTTTGACTTCAGGAGGTTTGACATCTAC
AGGAAGGTGCCCAAGGACCTCACGCAGCCGACGTACACCGGGGCCATTATCTCCATCTGC
TGCTGCCTCTTCATCTTCTTCCTCTTCCTCTCAGAGCTTACCGGATTCATAACAACAGAA
ATAGCACTTTGAAGCCCAGGGACATGGGAGCTGCTGCCTTTTGTTCAGAAGACCTGAAGG
CCTGGATACACCCTTCCTGGGGGAGGTGGCCAAGCAGACAGGAAGCCATTGGCCACCGAG
TTGGAACTTGGACATCACCTTGAACTGTGTCCTCACATCTCTGGTAGCTGGCCCAGAGTG
GGGAGGCCAGTAGCTTGGCCAGGAGGAGGAGCTGGATGGCTCCCTGGGAGCCCAGGTTAC
CAACTCTGAGGCCGGATTGTGAGCCAGGGCCAGGAAGAGAGCCGTCATGTCACATGGAGG
TGCCATGGGAGGCCTGAAGGCTTCTGAGCATAGAGTGATAGGATCGGGTTCATGCCTCAG
AAGATCACCTCTTGCAAAGATGGGTTTTGGGTGGGGTGACCCTGGAGGCCAAGGCCTGGA
CAGGGAGCTGGGCAGCGACCCTAGGCAGAGGGGCTGAGGGTCCTGGAGTGAGGGCTGTGG
AGAAAGGGGTGGGGGCAGCAAGGAGTTGGGTTCGGGACATCCTGCTGGTGGGGAACAGGT
GCTTGCTTACACCTGGAATGGTCCCCAGCACTCACTTGCATAACCTTGCCTTCCGCTCCC
ACCCCAGGCCCTTCCTGCCAGCCTTGCTGCTGTGTAAGTTTCCATTAAATCAGATTATTA
AGCATAGAGGTCAGCGACTTTGGGCAGGAATCTGAACTATTCAAGTGCTCTTCTAAAAGC
AAATAAAATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGGGCTGGGACCCACGCGGCGCCGCGGCCCACCTGGCCTGCAGCGCTCCCACCCCC
GGCGGCAGCGGCGGCGGCGGCGGCACGATGCCCTTTGACTTCAGGAGGTTTGACATCTAC
AGGAAGGTGCCCAAGGACCTCACGCAGCCGACGTACACCGGGGCCATTATCTCCATCTGC
TGCTGCCTCTTCATCTTCTTCCTCTTCCTCTCAGAGCTTACCGGATTCATAACAACAGAA
ATAGCACTTTGAAGCCCAGGGACATGGGAGCTGCTGCCTTTTGTTCAGAAGACCTGAAGG
CCTGGATACACCCTTCCTGGGGGAGGTGGCCAAGCAGACAGGAAGCCATTGGCCACCGAG
TTGGAACTTGGACATCACCTTGAACTGTGTCCTCACATCTCTGGTAGCTGGCCCAGAGTG
GGGAGGCCAGTAGCTTGGCCAGGAGGAGGAGCTGGATGGCTCCCTGGGAGCCCAGGTTAC
CAACTCTGAGGCCGGATTGTGAGCCAGGGCCAGGAAGAGAGCCGTCATGTCACATGGAGG
TGCCATGGGAGGCCTGAAGGCTTCTGAGCATAGAGTGATAGGATCGGGTTCATGCCTCAG
AAGATCACCTCTTGCAAAGATGGGTTTTGGGTGGGGTGACCCTGGAGGCCAAGGCCTGGA
CAGGGAGCTGGGCAGCGACCCTAGGCAGAGGGGCTGAGGGTCCTGGAGTGAGGGCTGTGG
AGAAAGGGGTGGGGGCAGCAAGGAGTTGGGTTCGGGACATCCTGCTGGTGGGGAACAGGT
GCTTGCTTACACCTGGAATGGTCCCCAGCACTCACTTGCATAACCTTGCCTTCCGCTCCC
ACCCCAGGCCCTTCCTGCCAGCCTTGCTGCTGTGTAAGTTTCCATTAAATCAGATTATTA
AGCATAGAGGTCAGCGACTTTGGGCAGGAATCTGAACTATTCAAGTGCTCTTCTAAAAGC
AAATAAAATTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               392-738, + strand, RNAz p=0.999983

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-738, + strand, RNAz p=0.999983

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-109, gnl|bosTau2|chr20 (3173827-3173929)
               

               
               1-109, gnl|canFam2|chr4 (42731162-42730929)
               

               
               1-109, gnl|hg17|chr5 (172193936-172194126)
               

               
               1-109, gnl|Hg17|chr5 (172193951-172194044)
               

               
               1-109, gnl|loxAfr1|scaffold_79287 (2502-2696)
               

               
               1-109, gnl|mm7|chr17 (24746075-24746242)
               

               
               1-109, gnl|Mm7|chr17 (24746089-24746181)
               

               
               1-109, gnl|panTro1|chr4 (179518459-179518649)
               

               
               1-109, gnl|rheMac2|chr6 (169232267-169232460)
               

               
               1-109, gnl|rn3|chr10 (16890612-16890456)
               


               
               243-738, gnl|bosTau2|chr20 (3238068-3238574)
               

               
               243-738, gnl|Hg17|chr5 (172261725-172262228)
               


               
               824-971, gnl|bosTau2|chr20 (3238701-3238848)
               

               
               824-971, gnl|Hg17|chr5 (172262362-172262506)
               

               
               824-971, gnl|Mm7|chr17 (24803128-24803276)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr20 (3173827-3173929)
               

               
               1-109, gnl|canFam2|chr4 (42731162-42730929)
               

               
               1-109, gnl|hg17|chr5 (172193936-172194126)
               

               
               1-109, gnl|Hg17|chr5 (172193951-172194044)
               

               
               1-109, gnl|loxAfr1|scaffold_79287 (2502-2696)
               

               
               1-109, gnl|mm7|chr17 (24746075-24746242)
               

               
               1-109, gnl|Mm7|chr17 (24746089-24746181)
               

               
               1-109, gnl|panTro1|chr4 (179518459-179518649)
               

               
               1-109, gnl|rheMac2|chr6 (169232267-169232460)
               

               
               1-109, gnl|rn3|chr10 (16890612-16890456)
               


               
               243-738, gnl|bosTau2|chr20 (3238068-3238574)
               

               
               243-738, gnl|Hg17|chr5 (172261725-172262228)
               


               
               824-971, gnl|bosTau2|chr20 (3238701-3238848)
               

               
               824-971, gnl|Hg17|chr5 (172262362-172262506)
               

               
               824-971, gnl|Mm7|chr17 (24803128-24803276)

	1-109, gnl\|bosTau2\|chr20 (3173827-3173929)
	1-109, gnl\|canFam2\|chr4 (42731162-42730929)
	1-109, gnl\|hg17\|chr5 (172193936-172194126)
	1-109, gnl\|Hg17\|chr5 (172193951-172194044)
	1-109, gnl\|loxAfr1\|scaffold_79287 (2502-2696)
	1-109, gnl\|mm7\|chr17 (24746075-24746242)
	1-109, gnl\|Mm7\|chr17 (24746089-24746181)
	1-109, gnl\|panTro1\|chr4 (179518459-179518649)
	1-109, gnl\|rheMac2\|chr6 (169232267-169232460)
	1-109, gnl\|rn3\|chr10 (16890612-16890456)

	243-738, gnl\|bosTau2\|chr20 (3238068-3238574)
	243-738, gnl\|Hg17\|chr5 (172261725-172262228)

	824-971, gnl\|bosTau2\|chr20 (3238701-3238848)
	824-971, gnl\|Hg17\|chr5 (172262362-172262506)
	824-971, gnl\|Mm7\|chr17 (24803128-24803276)