Non-Coding RNA Search

Ss1.1-Mixc-0025d01.3

Sequence:


               
               GGTTTGCAGACAGGGCACCAGGCTCCGAGAGGGTGCCTGAGGTGCCTGGGGTCACACAGG
CCATCCGATGCCCACGTTTCCCGCCAGATGCCTGGACAGTGACTCCGCTTGGAGATCCCT
GCCTGGGAAATCCGGTCTCCAGGGGTTCCCCTGACCCCCGCCGAGGCCCCATTCAAGAAT
GCCCGAGGCCAAGAAGCTGCATTGTGGGAAATTCAGAAAATGGAGAGAAGGAGAGAGGAA
GCCTTGACCTCTCCTGGGAACTTCGACCTGCATATCCGGCCGGCCACTCGCCATCTCCCT
TTGGGGTCCCCTGGACATGTCGAACAGATCATGGCCAAGCTGGCCTTCTGGACTTCTCTC
CCCAGTCCTTTTCCCAGCCACCCCCACCCCCATCCTGCATCCCAGCAAACCGCATCCCAA
CCCCCCACTCGTGCCTTCTAGAAGCCTCTCTGGCATCGCCCCTTCCATCCCCCGTCAGGA
ATCCATCCACAGACCCCGAGGGTCTCATCTCTATGGACCCTCCCATGGTCACTGCCCGAG
ACATCACAGAAGTGAAGCGAGGGGGTCGCTGTTAATGAAAAGCACGCTTTGGGGGGGTAT
GCTGTAGGAAAAGGCAGAGGCTCTCAGAGCTGTTCCCCCCTTCCCCAGAGTGGCCGCCCC
CCACCGACCCCTGCCCCCAGGCCTTGTACTCCGGGTGCAGTCAGCTCTCGAGAGGTGGGG
GTCAGAGGGCAGAAAAGACCTGCAGGGAGAGAGCGTGAGAGCGGAGACCTTCAGCGCCCG
CACGGGTGGCCATGATGGGAGAGTCCTGGCACGTGGCGCCAGCCTTTGGATTTGGTGAAT
GTGTGTGATCAGCTAAAAGTAAAACTGTGCTTTTTTTCCTCCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTGCAGACAGGGCACCAGGCTCCGAGAGGGTGCCTGAGGTGCCTGGGGTCACACAGG
CCATCCGATGCCCACGTTTCCCGCCAGATGCCTGGACAGTGACTCCGCTTGGAGATCCCT
GCCTGGGAAATCCGGTCTCCAGGGGTTCCCCTGACCCCCGCCGAGGCCCCATTCAAGAAT
GCCCGAGGCCAAGAAGCTGCATTGTGGGAAATTCAGAAAATGGAGAGAAGGAGAGAGGAA
GCCTTGACCTCTCCTGGGAACTTCGACCTGCATATCCGGCCGGCCACTCGCCATCTCCCT
TTGGGGTCCCCTGGACATGTCGAACAGATCATGGCCAAGCTGGCCTTCTGGACTTCTCTC
CCCAGTCCTTTTCCCAGCCACCCCCACCCCCATCCTGCATCCCAGCAAACCGCATCCCAA
CCCCCCACTCGTGCCTTCTAGAAGCCTCTCTGGCATCGCCCCTTCCATCCCCCGTCAGGA
ATCCATCCACAGACCCCGAGGGTCTCATCTCTATGGACCCTCCCATGGTCACTGCCCGAG
ACATCACAGAAGTGAAGCGAGGGGGTCGCTGTTAATGAAAAGCACGCTTTGGGGGGGTAT
GCTGTAGGAAAAGGCAGAGGCTCTCAGAGCTGTTCCCCCCTTCCCCAGAGTGGCCGCCCC
CCACCGACCCCTGCCCCCAGGCCTTGTACTCCGGGTGCAGTCAGCTCTCGAGAGGTGGGG
GTCAGAGGGCAGAAAAGACCTGCAGGGAGAGAGCGTGAGAGCGGAGACCTTCAGCGCCCG
CACGGGTGGCCATGATGGGAGAGTCCTGGCACGTGGCGCCAGCCTTTGGATTTGGTGAAT
GTGTGTGATCAGCTAAAAGTAAAACTGTGCTTTTTTTCCTCCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-397, - strand, RNAz p=0.993366

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-397, - strand, RNAz p=0.993366

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               240-532, gnl|bosTau2|chr29 (40641068-40640765)
               

               
               240-532, gnl|Hg17|chr11 (68957665-68957368)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-532, gnl|bosTau2|chr29 (40641068-40640765)
               

               
               240-532, gnl|Hg17|chr11 (68957665-68957368)

	240-532, gnl\|bosTau2\|chr29 (40641068-40640765)
	240-532, gnl\|Hg17\|chr11 (68957665-68957368)