Non-Coding RNA Search

Ss1.1-Mixc-0025j16.5

Sequence:


               
               AGGNAAAAGTAGGTAAGCTTTAAACACATATACACA------------CATATTTATATA
TGTATAGCATATACGTAGAGTTAGGGTATTTTGGTTAAGCAGAAACCAGCGTTAGCATAA
TTTGTTCTTGATTTAAAAAAACAAACAAACAGAACACCAAGCACAAACATATTCTAAGAC
ATTTCTACAGTTTTAACAGAAACTGGTCTTGGAAACTCCACCAAATTCATTATGACCTGA
ACACAACTGATCCGTGACTTGGATGAGGGGCTCAACTAGGTCTGAGAGCATTCTGGGTCC
GTGAGCGGGAGGACATGGCACTGACCAGGCGTGAAGGAGTCCCAAGGCATCACGCATGCA
CAGTCTTTGGGTTATTGCTTGATTCACATCTTCTTGACCCTGGGCTGCACTTCTGCGATG
GACACATCTTTGGCGCACTAGAACCATGTGATTGTGACCGCTTCATTAGAGTTTGCTTTG
GGACAGCCCCAGTGGGGTGGCGATGGCTATGACTAAGTGATGGTCTCCCCTGTTAAAGAA
AGGAGGCGCCTCTCTCCTCCCTCAAATCACCAGCACTTCATGAGGGAGCGGCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGNAAAAGTAGGTAAGCTTTAAACACATATACACA------------CATATTTATATA
TGTATAGCATATACGTAGAGTTAGGGTATTTTGGTTAAGCAGAAACCAGCGTTAGCATAA
TTTGTTCTTGATTTAAAAAAACAAACAAACAGAACACCAAGCACAAACATATTCTAAGAC
ATTTCTACAGTTTTAACAGAAACTGGTCTTGGAAACTCCACCAAATTCATTATGACCTGA
ACACAACTGATCCGTGACTTGGATGAGGGGCTCAACTAGGTCTGAGAGCATTCTGGGTCC
GTGAGCGGGAGGACATGGCACTGACCAGGCGTGAAGGAGTCCCAAGGCATCACGCATGCA
CAGTCTTTGGGTTATTGCTTGATTCACATCTTCTTGACCCTGGGCTGCACTTCTGCGATG
GACACATCTTTGGCGCACTAGAACCATGTGATTGTGACCGCTTCATTAGAGTTTGCTTTG
GGACAGCCCCAGTGGGGTGGCGATGGCTATGACTAAGTGATGGTCTCCCCTGTTAAAGAA
AGGAGGCGCCTCTCTCCTCCCTCAAATCACCAGCACTTCATGAGGGAGCGGCTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               86-204, - strand, RNAz p=0.848012

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-204, - strand, RNAz p=0.848012

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               21-588, gnl|bosTau2|chr10 (29859735-29860290)
               

               
               21-588, gnl|canFam2|chr8 (30992887-30993408)
               

               
               21-588, gnl|dasNov1|scaffold_1554 (1414-886)
               

               
               21-588, gnl|echTel1|scaffold_232388 (15544-16078)
               

               
               21-588, gnl|hg17|chr14 (51264868-51265375)
               

               
               21-588, gnl|Hg17|chr14 (51265424-51264885)
               

               
               21-588, gnl|loxAfr1|scaffold_9355 (14304-14846)
               

               
               21-588, gnl|mm7|chr12 (68843866-68844343)
               

               
               21-588, gnl|Mm7|chr12 (68844396-68843881)
               

               
               21-588, gnl|monDom2|scaffold_73 (8069836-8070297)
               

               
               21-588, gnl|oryCun1|scaffold_174207 (49145-48619)
               

               
               21-588, gnl|panTro1|chr15 (50680359-50680866)
               

               
               21-588, gnl|rheMac2|chr7 (114780625-114781152)
               

               
               21-588, gnl|rn3|chr6 (93028729-93029198)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-588, gnl|bosTau2|chr10 (29859735-29860290)
               

               
               21-588, gnl|canFam2|chr8 (30992887-30993408)
               

               
               21-588, gnl|dasNov1|scaffold_1554 (1414-886)
               

               
               21-588, gnl|echTel1|scaffold_232388 (15544-16078)
               

               
               21-588, gnl|hg17|chr14 (51264868-51265375)
               

               
               21-588, gnl|Hg17|chr14 (51265424-51264885)
               

               
               21-588, gnl|loxAfr1|scaffold_9355 (14304-14846)
               

               
               21-588, gnl|mm7|chr12 (68843866-68844343)
               

               
               21-588, gnl|Mm7|chr12 (68844396-68843881)
               

               
               21-588, gnl|monDom2|scaffold_73 (8069836-8070297)
               

               
               21-588, gnl|oryCun1|scaffold_174207 (49145-48619)
               

               
               21-588, gnl|panTro1|chr15 (50680359-50680866)
               

               
               21-588, gnl|rheMac2|chr7 (114780625-114781152)
               

               
               21-588, gnl|rn3|chr6 (93028729-93029198)

	21-588, gnl\|bosTau2\|chr10 (29859735-29860290)
	21-588, gnl\|canFam2\|chr8 (30992887-30993408)
	21-588, gnl\|dasNov1\|scaffold_1554 (1414-886)
	21-588, gnl\|echTel1\|scaffold_232388 (15544-16078)
	21-588, gnl\|hg17\|chr14 (51264868-51265375)
	21-588, gnl\|Hg17\|chr14 (51265424-51264885)
	21-588, gnl\|loxAfr1\|scaffold_9355 (14304-14846)
	21-588, gnl\|mm7\|chr12 (68843866-68844343)
	21-588, gnl\|Mm7\|chr12 (68844396-68843881)
	21-588, gnl\|monDom2\|scaffold_73 (8069836-8070297)
	21-588, gnl\|oryCun1\|scaffold_174207 (49145-48619)
	21-588, gnl\|panTro1\|chr15 (50680359-50680866)
	21-588, gnl\|rheMac2\|chr7 (114780625-114781152)
	21-588, gnl\|rn3\|chr6 (93028729-93029198)