Non-Coding RNA Search

Ss1.1-Mixc-0025k07.5

Sequence:


               
               TGAACCTGAACGTGCAGATGACCCCACAGCAGCAGATGCTGATGTCGCAGAAGATGCGGG
GCCCCGGGGACATGATGGGGCCGCAGGGCCTCAGTCCTGAGGAGATGGCCCGAGTGCGGG
CCCAGAACAGCAGTGGCATGATGGGCGGCCCGCAGAAGATGCTTATGCCCTCACAGTTTC
CCAACCAGGGCCAGCAGGGATTCTCCGGGGGCCAGGGACCCTACCAAGCCATGCCCCAGG
ACATGGGCAGTACTCAAGACATGTTCAGCCCGGACCAGAGCACGATGCCCATGGGCAATG
TGGGTACCACCCGGCTCAGCCACATGCCCTTGCCCCCTGCGTCCAATCCTCCTGGGTCTG
TGCATTCAGCCCCAAACCGGGGCCTGGGCAGGCGGCCTTCAGACCTCACCATCAGTATTA
ATCAGATGGGCTCGCCGGGCATGGGCCACCTGAAGTCGCCCACCCTTAGCCAGGTACACT
CACCCCTGGTCACCTCTCCCTCCGCCAACCTCAAGTCACCCCAGACGCCCTCACAGATGG
TGCCCTTGCCTTCGGCCAACCCACCAGGACCTCTCAAGTCGCCCCAGGTCCTCAGCTCCT
CCCTCAGCGTCCGTTCGCCCACCGGCTCGCCCAGCAGGCTCAAGTCTCCCTCCATGGCGG
TGCCTTCTCCGGGCTGGGTCGCCTCGCCCAAGACAGCCATGCCCAGCCCTGGGGTCCCCC
AGAACAAGCAGCCGCCTCTGAACATGAACTCTTCCACCACCCTGGGCAACATGGAACAGG
GTGCCCTCCCGCCTAGCGGCCCCCGGAGCAGCTCCTCAGCGCCTCCCACCAACCCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACCTGAACGTGCAGATGACCCCACAGCAGCAGATGCTGATGTCGCAGAAGATGCGGG
GCCCCGGGGACATGATGGGGCCGCAGGGCCTCAGTCCTGAGGAGATGGCCCGAGTGCGGG
CCCAGAACAGCAGTGGCATGATGGGCGGCCCGCAGAAGATGCTTATGCCCTCACAGTTTC
CCAACCAGGGCCAGCAGGGATTCTCCGGGGGCCAGGGACCCTACCAAGCCATGCCCCAGG
ACATGGGCAGTACTCAAGACATGTTCAGCCCGGACCAGAGCACGATGCCCATGGGCAATG
TGGGTACCACCCGGCTCAGCCACATGCCCTTGCCCCCTGCGTCCAATCCTCCTGGGTCTG
TGCATTCAGCCCCAAACCGGGGCCTGGGCAGGCGGCCTTCAGACCTCACCATCAGTATTA
ATCAGATGGGCTCGCCGGGCATGGGCCACCTGAAGTCGCCCACCCTTAGCCAGGTACACT
CACCCCTGGTCACCTCTCCCTCCGCCAACCTCAAGTCACCCCAGACGCCCTCACAGATGG
TGCCCTTGCCTTCGGCCAACCCACCAGGACCTCTCAAGTCGCCCCAGGTCCTCAGCTCCT
CCCTCAGCGTCCGTTCGCCCACCGGCTCGCCCAGCAGGCTCAAGTCTCCCTCCATGGCGG
TGCCTTCTCCGGGCTGGGTCGCCTCGCCCAAGACAGCCATGCCCAGCCCTGGGGTCCCCC
AGAACAAGCAGCCGCCTCTGAACATGAACTCTTCCACCACCCTGGGCAACATGGAACAGG
GTGCCCTCCCGCCTAGCGGCCCCCGGAGCAGCTCCTCAGCGCCTCCCACCAACCCTCCCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-159, - strand, RNAz p=0.974579
               

               
               200-759, + strand, RNAz p=0.978043

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.974579
               

               
               200-759, + strand, RNAz p=0.978043

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               201-319, - strand, RNAmicro p=0.999317
               

               
               428-536, - strand, RNAmicro p=0.998648
               

               
               666-769, - strand, RNAmicro p=0.985515

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               201-319, - strand, RNAmicro p=0.999317
               

               
               428-536, - strand, RNAmicro p=0.998648
               

               
               666-769, - strand, RNAmicro p=0.985515

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-783, gnl|bosTau2|chr15 (16867247-16868029)
               

               
               1-783, gnl|Hg17|chr11 (118277317-118276535)
               

               
               1-783, gnl|Mm7|chr9 (44441436-44442218)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-783, gnl|bosTau2|chr15 (16867247-16868029)
               

               
               1-783, gnl|Hg17|chr11 (118277317-118276535)
               

               
               1-783, gnl|Mm7|chr9 (44441436-44442218)

	1-159, - strand, RNAz p=0.974579
	200-759, + strand, RNAz p=0.978043

	201-319, - strand, RNAmicro p=0.999317
	428-536, - strand, RNAmicro p=0.998648
	666-769, - strand, RNAmicro p=0.985515

	1-783, gnl\|bosTau2\|chr15 (16867247-16868029)
	1-783, gnl\|Hg17\|chr11 (118277317-118276535)
	1-783, gnl\|Mm7\|chr9 (44441436-44442218)