Non-Coding RNA Search

Ss1.1-Mixc-0025n07.5

Sequence:


               
               ATGAAACGGGCAGCTGCAGCAGCCATCGGAGGAGGTGATCTCGCTGGATTTCCAAGCCTG
CACCTGCCCCCGGCCCCGGGATGGGTGGGAGACCTTAGAGAGGTGGCCCTGCCGGAGTGG
CGAGTGCTGGCTCGTTGGCCTCCCTCCGCTCCCAGAACCTACTTCCGCGGGGGGGGGGGA
CCTCGGGGGCAGAGAGCGGTGCTCCCCTGGAAAAGGCCTCCGGCACCCCCCGACCTAGCT
GCTCCTCTGGCCCTCGGGTGTCATAGGCATGTAGAGATTTCATTCGAAACCGGGTTTGCT
GCCGAAATCGGGGGTGGTTGATTTCTCCCCCACACGCACACACCTGAAGCCCAGGGAGGG
GTAATGACTCCCCCACTGTCACTCAGCGAGCTAGAGACCCAACCGGGCCCCCCCCAACCT
ACTTCCGCAGCTGGGTCCACCCCCCCCCCACTTTTGTTCTCTACCTTGGGAGCCCCTCCA
AGGGGCTGTCTCAGGTTGCTCGGACCGGGGTTCACTGACTCTGTCAACGAATTCCCAACC
GGGGTTCACTCCCGAGCCCACGCCCCGAGCCAGCTCCTCTCCCCCTACAGCCCTGGCCGT
GGGGGCTGTGCCCGTGGTGCTGGGAGCCCTGGGCTTCACCGGGGCAGGGATCGCGGCCTC
CTCCTTAGCGGCCAAGATGATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAAACGGGCAGCTGCAGCAGCCATCGGAGGAGGTGATCTCGCTGGATTTCCAAGCCTG
CACCTGCCCCCGGCCCCGGGATGGGTGGGAGACCTTAGAGAGGTGGCCCTGCCGGAGTGG
CGAGTGCTGGCTCGTTGGCCTCCCTCCGCTCCCAGAACCTACTTCCGCGGGGGGGGGGGA
CCTCGGGGGCAGAGAGCGGTGCTCCCCTGGAAAAGGCCTCCGGCACCCCCCGACCTAGCT
GCTCCTCTGGCCCTCGGGTGTCATAGGCATGTAGAGATTTCATTCGAAACCGGGTTTGCT
GCCGAAATCGGGGGTGGTTGATTTCTCCCCCACACGCACACACCTGAAGCCCAGGGAGGG
GTAATGACTCCCCCACTGTCACTCAGCGAGCTAGAGACCCAACCGGGCCCCCCCCAACCT
ACTTCCGCAGCTGGGTCCACCCCCCCCCCACTTTTGTTCTCTACCTTGGGAGCCCCTCCA
AGGGGCTGTCTCAGGTTGCTCGGACCGGGGTTCACTGACTCTGTCAACGAATTCCCAACC
GGGGTTCACTCCCGAGCCCACGCCCCGAGCCAGCTCCTCTCCCCCTACAGCCCTGGCCGT
GGGGGCTGTGCCCGTGGTGCTGGGAGCCCTGGGCTTCACCGGGGCAGGGATCGCGGCCTC
CTCCTTAGCGGCCAAGATGATGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               544-654, + strand, RNAz p=0.75326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               544-654, + strand, RNAz p=0.75326

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               331-684, gnl|bosTau2|chr21 (39657142-39657516)
               

               
               331-684, gnl|Hg17|chr14 (93665047-93664672)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               331-684, gnl|bosTau2|chr21 (39657142-39657516)
               

               
               331-684, gnl|Hg17|chr14 (93665047-93664672)

	331-684, gnl\|bosTau2\|chr21 (39657142-39657516)
	331-684, gnl\|Hg17\|chr14 (93665047-93664672)