Non-Coding RNA Search

Ss1.1-Mixc-0025p20.3

Sequence:


               
               GGCCGTCGGGGGGCCGCAGTCATCCCAACCCGAGGTGCCCGCACAGGGGCTGGCCCTGGA
CAAGGCGGCCACCGCCGCGCACCTGAAGGCGGCCCTCAGCCGGCCGGACAACCGGGCAGG
TGCTGAGGAGCTGCAGGCACTGCTGGAGCGGGTGCTGAGCGCCGAGCGGCCACTGGCAGC
GGCTGCGGACGGCGAGGAGGCGGCAGCGGCCAGCGGCGGGGGCGGTCCGGGGGCGGCCGA
GGAGGAGGCCCTGGAGTGGTGTAAGTGCCTTCTGGCTGGAGGCGGAGGCTACGACGAGTT
CTGCGCGGCAGTGCGGGCCTACGACCCCGCGGCGCTCTGCGGCCTGGTCTGGACAGCCAA
CTTCGTGGCCTACCGCTGCCGGACGTGCGGCATCTCCCCTTGCATGTCGCTGTGCGCCGA
GTGCTTCCACCAGGGTGACCACACCGGACACGACTTCAACATGTTCCGCAGCCAGGCCGG
GGGTGCCTGTGACTGTGGGGACAGCAACGTGATGCGGGAGAGTGGGTTTTGCAAAAGGCA
TCAAATTAAATCAAGTTCAAATGTTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGA
ATTTGTTCTTCCAAGATTTATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGA
ACCAGCAGCTGATGTACCATCAGAAAAAGACCTTAACAAAGTCCTTCAGCTTTTGGAACC
TCAAATTTCCTTTTTAGAAGATCTAACTAAAATGGGAGGAGCAATGCGGTCTGTTCTTAC
TCAGGTTTTGACAAACCAACAAAACTACAAAGATCTGACTTCTGGTCTTGGAGAAAATGC
TTGTGCAAAGAAAAGTCATGAAAAGTACCTTATAGCTTTGAAGAGCTCTGGACTTACTTA
TCCTGAGGATAAACTTGTATATGGTATACAAGAGCCATCTGCTGGCACTAGCACTCTGGC
AGGTCAAGGTTTTGCAGGTGCAACAGGAACATTGGGACAACTAGATTCTTCAGATGAGGA
GGATCAGGATGGGAGTCAAGGTCTGGGAAAGAGAAAGAGGGTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGTCGGGGGGCCGCAGTCATCCCAACCCGAGGTGCCCGCACAGGGGCTGGCCCTGGA
CAAGGCGGCCACCGCCGCGCACCTGAAGGCGGCCCTCAGCCGGCCGGACAACCGGGCAGG
TGCTGAGGAGCTGCAGGCACTGCTGGAGCGGGTGCTGAGCGCCGAGCGGCCACTGGCAGC
GGCTGCGGACGGCGAGGAGGCGGCAGCGGCCAGCGGCGGGGGCGGTCCGGGGGCGGCCGA
GGAGGAGGCCCTGGAGTGGTGTAAGTGCCTTCTGGCTGGAGGCGGAGGCTACGACGAGTT
CTGCGCGGCAGTGCGGGCCTACGACCCCGCGGCGCTCTGCGGCCTGGTCTGGACAGCCAA
CTTCGTGGCCTACCGCTGCCGGACGTGCGGCATCTCCCCTTGCATGTCGCTGTGCGCCGA
GTGCTTCCACCAGGGTGACCACACCGGACACGACTTCAACATGTTCCGCAGCCAGGCCGG
GGGTGCCTGTGACTGTGGGGACAGCAACGTGATGCGGGAGAGTGGGTTTTGCAAAAGGCA
TCAAATTAAATCAAGTTCAAATGTTCCCTGTGTCCCCAAAGACTTACTGATGATGTCTGA
ATTTGTTCTTCCAAGATTTATTTTTTGTCTTATTCAGTACTTAAGAGAAGGCTATAATGA
ACCAGCAGCTGATGTACCATCAGAAAAAGACCTTAACAAAGTCCTTCAGCTTTTGGAACC
TCAAATTTCCTTTTTAGAAGATCTAACTAAAATGGGAGGAGCAATGCGGTCTGTTCTTAC
TCAGGTTTTGACAAACCAACAAAACTACAAAGATCTGACTTCTGGTCTTGGAGAAAATGC
TTGTGCAAAGAAAAGTCATGAAAAGTACCTTATAGCTTTGAAGAGCTCTGGACTTACTTA
TCCTGAGGATAAACTTGTATATGGTATACAAGAGCCATCTGCTGGCACTAGCACTCTGGC
AGGTCAAGGTTTTGCAGGTGCAACAGGAACATTGGGACAACTAGATTCTTCAGATGAGGA
GGATCAGGATGGGAGTCAAGGTCTGGGAAAGAGAAAGAGGGTCAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61814136|ref|XP_597142.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814136|ref|XP_597142.1|

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               1-527, gnl|bosTau2|chr2 (22115995-22116521)
               

               
               1-527, gnl|Hg17|chr2 (170509545-170510071)
               

               
               1-527, gnl|Mm7|chr2 (69827867-69828390)
               


               
               664-826, gnl|bosTau2|chr2 (22154966-22155128)
               

               
               664-826, gnl|canFam2|chr36 (17557211-17557391)
               

               
               664-826, gnl|danRer3|chrUn (143921257-143921446)
               

               
               664-826, gnl|dasNov1|scaffold_25061 (43827-43640)
               

               
               664-826, gnl|echTel1|scaffold_307862 (5826-6013)
               

               
               664-826, gnl|fr1|chrUn (7161020-7161200)
               

               
               664-826, gnl|galGal2|chr7 (19345671-19345485)
               

               
               664-826, gnl|hg17|chr2 (170557791-170557978)
               

               
               664-826, gnl|Hg17|chr2 (170557806-170557968)
               

               
               664-826, gnl|mm7|chr2 (69847583-69847796)
               

               
               664-826, gnl|Mm7|chr2 (69847624-69847786)
               

               
               664-826, gnl|monDom2|scaffold_2 (68161902-68162088)
               

               
               664-826, gnl|oryCun1|scaffold_187292 (15105-15318)
               

               
               664-826, gnl|panTro1|chr13 (60165540-60165727)
               

               
               664-826, gnl|rheMac2|chr12 (33513814-33514001)
               

               
               664-826, gnl|rn3|chr3 (51957286-51957494)
               

               
               664-826, gnl|tetNig1|chr2 (11577020-11576859)
               

               
               664-826, gnl|xenTro1|scaffold_65 (2591480-2591291)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-527, gnl|bosTau2|chr2 (22115995-22116521)
               

               
               1-527, gnl|Hg17|chr2 (170509545-170510071)
               

               
               1-527, gnl|Mm7|chr2 (69827867-69828390)
               


               
               664-826, gnl|bosTau2|chr2 (22154966-22155128)
               

               
               664-826, gnl|canFam2|chr36 (17557211-17557391)
               

               
               664-826, gnl|danRer3|chrUn (143921257-143921446)
               

               
               664-826, gnl|dasNov1|scaffold_25061 (43827-43640)
               

               
               664-826, gnl|echTel1|scaffold_307862 (5826-6013)
               

               
               664-826, gnl|fr1|chrUn (7161020-7161200)
               

               
               664-826, gnl|galGal2|chr7 (19345671-19345485)
               

               
               664-826, gnl|hg17|chr2 (170557791-170557978)
               

               
               664-826, gnl|Hg17|chr2 (170557806-170557968)
               

               
               664-826, gnl|mm7|chr2 (69847583-69847796)
               

               
               664-826, gnl|Mm7|chr2 (69847624-69847786)
               

               
               664-826, gnl|monDom2|scaffold_2 (68161902-68162088)
               

               
               664-826, gnl|oryCun1|scaffold_187292 (15105-15318)
               

               
               664-826, gnl|panTro1|chr13 (60165540-60165727)
               

               
               664-826, gnl|rheMac2|chr12 (33513814-33514001)
               

               
               664-826, gnl|rn3|chr3 (51957286-51957494)
               

               
               664-826, gnl|tetNig1|chr2 (11577020-11576859)
               

               
               664-826, gnl|xenTro1|scaffold_65 (2591480-2591291)

	1-527, gnl\|bosTau2\|chr2 (22115995-22116521)
	1-527, gnl\|Hg17\|chr2 (170509545-170510071)
	1-527, gnl\|Mm7\|chr2 (69827867-69828390)

	664-826, gnl\|bosTau2\|chr2 (22154966-22155128)
	664-826, gnl\|canFam2\|chr36 (17557211-17557391)
	664-826, gnl\|danRer3\|chrUn (143921257-143921446)
	664-826, gnl\|dasNov1\|scaffold_25061 (43827-43640)
	664-826, gnl\|echTel1\|scaffold_307862 (5826-6013)
	664-826, gnl\|fr1\|chrUn (7161020-7161200)
	664-826, gnl\|galGal2\|chr7 (19345671-19345485)
	664-826, gnl\|hg17\|chr2 (170557791-170557978)
	664-826, gnl\|Hg17\|chr2 (170557806-170557968)
	664-826, gnl\|mm7\|chr2 (69847583-69847796)
	664-826, gnl\|Mm7\|chr2 (69847624-69847786)
	664-826, gnl\|monDom2\|scaffold_2 (68161902-68162088)
	664-826, gnl\|oryCun1\|scaffold_187292 (15105-15318)
	664-826, gnl\|panTro1\|chr13 (60165540-60165727)
	664-826, gnl\|rheMac2\|chr12 (33513814-33514001)
	664-826, gnl\|rn3\|chr3 (51957286-51957494)
	664-826, gnl\|tetNig1\|chr2 (11577020-11576859)
	664-826, gnl\|xenTro1\|scaffold_65 (2591480-2591291)