Ss1.1-Mixc-0026j07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGCGCGGGGTCTGGCCGCTGCCGCTGGAAGAGTTTCTCCCAACGCCACCATCAGAAAG AGAGCTCAAGAAAATATTGACACCCCTGAAAGGAAGAAACACCAGTTGAAAGAGGTGGGC ATCTGCGGGACAGCCCCAAGCTTGCAGGGACCAGACCTCCGACCCCGTCATCGAAGCAAC GGGGACCCTTTGAATTGGAACTAAAAACGACGAGCTGGGCCAGTAAGGAAATATCCAGGA ACCCCTCTGACCAGGAGACTCCATCCTGCTGACATCGAAAGAACTGCCCAGGTGGAGCAC CATGGAAGGCGACTGTCTGAGCTGCATGAAGTATCTGATGTTTGTCTTCAATTTCTTCAT ATTTCTGGGCGGGGCCTGCCTGCTGGGCGTGGGCATCTGGGTCATGGTCGACCCCACCGG CTTCCGCGAGATCGTGGCTGCCAACCCCCTGCTCATCACGGGTGCCTACATCCTCCTGGC CATGGGGGGCCTGCTTTTCCTGCTCGGCTTCCTGGGCTGCTGCGGGGCCGTCCGGGAGAA CAAGTGTCTGCTGCTGTTTTTCTTCCTGTTCATCCTGATCATCTTCTTAGCGGAGCTGTC GGCGGCCATCCTGGCCTTCATCTTCAGGGAAAATCTCACCCGTGAATTCTTCACCAAGGA GCTCACCAAGCACTACCAGGGCAACAATGACACAGATGTCTTCTCTGCCACCTGGAACTC CGTCATGATCACATTTGGTTGCTGTGGGGTCAATGGGCCTGAAGACTTTAAGTTTGCATC AGTTTTCCGACTCCTGACTTTGGACAGTGACGAGGTGCCTGAGGCCTGCTGCCGGAGAGA ACCCCAGAGTCGGGATGGGGTCCTGCTGAGCAGGGAGGAGTGCCTCCTGGGACGGGAACT GTTCCTGAACAAGCAGGGCTGCTACACAGTGATCCTCAACGCCTTCGAAACCTATGTCTA CCTGGCTGGAGCCCTCGCCATAGGGGTGCTGGCCATCGAGCTTTTTGCCATGATCTTTGC CATGTGCCTCTTCCGGGGCATCCAGTAGAGGGTGTGGCCTGCAGCCTGAAGACTCACCCC GCCTACCACAGCCCAGCACCCAATGCCCTCCCCTTCCCCGCACCCCTGCCTTCTTGGCCC CCCCTGGGGGGAGGAGGTGAGGCCATCGTGAGTGGCCAGGAGAAGGGCCGGGGGAAAATA GCTATTTTTTTAACAGAACAAAATGAAGACAAAAATATGGACTGATGTAGCCCGTCTGGA CTCCAGAGTGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGCGCGGGGTCTGGCCGCTGCCGCTGGAAGAGTTTCTCCCAACGCCACCATCAGAAAG AGAGCTCAAGAAAATATTGACACCCCTGAAAGGAAGAAACACCAGTTGAAAGAGGTGGGC ATCTGCGGGACAGCCCCAAGCTTGCAGGGACCAGACCTCCGACCCCGTCATCGAAGCAAC GGGGACCCTTTGAATTGGAACTAAAAACGACGAGCTGGGCCAGTAAGGAAATATCCAGGA ACCCCTCTGACCAGGAGACTCCATCCTGCTGACATCGAAAGAACTGCCCAGGTGGAGCAC CATGGAAGGCGACTGTCTGAGCTGCATGAAGTATCTGATGTTTGTCTTCAATTTCTTCAT ATTTCTGGGCGGGGCCTGCCTGCTGGGCGTGGGCATCTGGGTCATGGTCGACCCCACCGG CTTCCGCGAGATCGTGGCTGCCAACCCCCTGCTCATCACGGGTGCCTACATCCTCCTGGC CATGGGGGGCCTGCTTTTCCTGCTCGGCTTCCTGGGCTGCTGCGGGGCCGTCCGGGAGAA CAAGTGTCTGCTGCTGTTTTTCTTCCTGTTCATCCTGATCATCTTCTTAGCGGAGCTGTC GGCGGCCATCCTGGCCTTCATCTTCAGGGAAAATCTCACCCGTGAATTCTTCACCAAGGA GCTCACCAAGCACTACCAGGGCAACAATGACACAGATGTCTTCTCTGCCACCTGGAACTC CGTCATGATCACATTTGGTTGCTGTGGGGTCAATGGGCCTGAAGACTTTAAGTTTGCATC AGTTTTCCGACTCCTGACTTTGGACAGTGACGAGGTGCCTGAGGCCTGCTGCCGGAGAGA ACCCCAGAGTCGGGATGGGGTCCTGCTGAGCAGGGAGGAGTGCCTCCTGGGACGGGAACT GTTCCTGAACAAGCAGGGCTGCTACACAGTGATCCTCAACGCCTTCGAAACCTATGTCTA CCTGGCTGGAGCCCTCGCCATAGGGGTGCTGGCCATCGAGCTTTTTGCCATGATCTTTGC CATGTGCCTCTTCCGGGGCATCCAGTAGAGGGTGTGGCCTGCAGCCTGAAGACTCACCCC GCCTACCACAGCCCAGCACCCAATGCCCTCCCCTTCCCCGCACCCCTGCCTTCTTGGCCC CCCCTGGGGGGAGGAGGTGAGGCCATCGTGAGTGGCCAGGAGAAGGGCCGGGGGAAAATA GCTATTTTTTTAACAGAACAAAATGAAGACAAAAATATGGACTGATGTAGCCCGTCTGGA CTCCAGAGTGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 800-917, + strand, RNAz p=0.630855 | |
| 1115-1232, - strand, RNAz p=0.999494 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 800-917, + strand, RNAz p=0.630855 | |
| 1115-1232, - strand, RNAz p=0.999494 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 365-559, gnl|bosTau2|chr15 (46704047-46704241) | |
| 365-559, gnl|Hg17|chr11 (44887832-44888026) | |
| 365-559, gnl|Mm7|chr2 (93070929-93070735) | |
| 734-917, gnl|bosTau2|chr15 (46712096-46712279) | |
| 734-917, gnl|canFam2|chr18 (47432276-47432148) | |
| 734-917, gnl|danRer3|chr18 (31487847-31487725) | |
| 734-917, gnl|dasNov1|scaffold_126170 (2113-2241) | |
| 734-917, gnl|echTel1|scaffold_297316 (6184-6311) | |
| 734-917, gnl|fr1|chrUn (37896467-37896589) | |
| 734-917, gnl|hg17|chr11 (44897942-44898070) | |
| 734-917, gnl|Hg17|chr11 (44897944-44898127) | |
| 734-917, gnl|loxAfr1|scaffold_18153 (9185-9057) | |
| 734-917, gnl|mm7|chr2 (93060696-93060568) | |
| 734-917, gnl|Mm7|chr2 (93060692-93060509) | |
| 734-917, gnl|monDom2|scaffold_33 (10550977-10551105) | |
| 734-917, gnl|panTro1|chr9 (45402785-45402913) | |
| 734-917, gnl|rheMac2|chr14 (27188794-27188666) | |
| 734-917, gnl|rn3|chr3 (77506177-77506049) | |
| 734-917, gnl|tetNig1|chr13 (10443259-10443381) | |
| 734-917, gnl|xenTro1|scaffold_266 (604752-604627) | |
| 999-1272, gnl|bosTau2|chr15 (46734836-46735108) | |
| 999-1272, gnl|Hg17|chr11 (44907256-44907524) | |
| 999-1272, gnl|Mm7|chr2 (93055140-93054902) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 365-559, gnl|bosTau2|chr15 (46704047-46704241) | |
| 365-559, gnl|Hg17|chr11 (44887832-44888026) | |
| 365-559, gnl|Mm7|chr2 (93070929-93070735) | |
| 734-917, gnl|bosTau2|chr15 (46712096-46712279) | |
| 734-917, gnl|canFam2|chr18 (47432276-47432148) | |
| 734-917, gnl|danRer3|chr18 (31487847-31487725) | |
| 734-917, gnl|dasNov1|scaffold_126170 (2113-2241) | |
| 734-917, gnl|echTel1|scaffold_297316 (6184-6311) | |
| 734-917, gnl|fr1|chrUn (37896467-37896589) | |
| 734-917, gnl|hg17|chr11 (44897942-44898070) | |
| 734-917, gnl|Hg17|chr11 (44897944-44898127) | |
| 734-917, gnl|loxAfr1|scaffold_18153 (9185-9057) | |
| 734-917, gnl|mm7|chr2 (93060696-93060568) | |
| 734-917, gnl|Mm7|chr2 (93060692-93060509) | |
| 734-917, gnl|monDom2|scaffold_33 (10550977-10551105) | |
| 734-917, gnl|panTro1|chr9 (45402785-45402913) | |
| 734-917, gnl|rheMac2|chr14 (27188794-27188666) | |
| 734-917, gnl|rn3|chr3 (77506177-77506049) | |
| 734-917, gnl|tetNig1|chr13 (10443259-10443381) | |
| 734-917, gnl|xenTro1|scaffold_266 (604752-604627) | |
| 999-1272, gnl|bosTau2|chr15 (46734836-46735108) | |
| 999-1272, gnl|Hg17|chr11 (44907256-44907524) | |
| 999-1272, gnl|Mm7|chr2 (93055140-93054902) |