Non-Coding RNA Search

Ss1.1-Mixc-0026k06.5

Sequence:


               
               CTTGATAGTAGCTACTGGCTGGATGATCTTTTGGAATGCCAATAAATATTTTTTTAAAGA
AATAATTTTTTTTAAAGTATGTAAATGTAATGCTCTATGTAAAGCCCTTAGCTCAGTGTT
TGGTTAAAATACATACTCAGTAAATAGAAGCTATTATCCTCTTAGTTTAAGTTACTATAC
ACATTGAAATTAAATGTTTAGCTATAGACTCAATCCAGTTTTAATGCCTTCGTGTTAATA
AGGCCTTGTAACATGGAAGCAACACAAATAAAGGAATTTTATGTAGCTATTCATGATTCT
GCCCAGCTCAAGGTTAAGATAGCAACAAAATACTTCAACCAGAATAAAAGAAATCTCCAC
TTGACTGTAGCTCTCCATAACACTTCGCCAGGGTCAAGCTGTGTTATTTTCTTTCAGTGT
TAAACAGAAAGCATCTTAGGAGCATAGTTCAATTATTGATTGAATAGTGGGTTCTATTTG
ACTGTAATTCTAACAAATATACTTCAATGAGTTCATGACCAGAGATGGGCCAACAGAAGG
GTAAAGGTTTCACTCAAGCTTTAAGGCAAATGATCAGACTGAGTTAATAACAGGGATATC
TTCTATTTTTCTGAGAATAATACCATCCCATCCCAGTTGGATAAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGATAGTAGCTACTGGCTGGATGATCTTTTGGAATGCCAATAAATATTTTTTTAAAGA
AATAATTTTTTTTAAAGTATGTAAATGTAATGCTCTATGTAAAGCCCTTAGCTCAGTGTT
TGGTTAAAATACATACTCAGTAAATAGAAGCTATTATCCTCTTAGTTTAAGTTACTATAC
ACATTGAAATTAAATGTTTAGCTATAGACTCAATCCAGTTTTAATGCCTTCGTGTTAATA
AGGCCTTGTAACATGGAAGCAACACAAATAAAGGAATTTTATGTAGCTATTCATGATTCT
GCCCAGCTCAAGGTTAAGATAGCAACAAAATACTTCAACCAGAATAAAAGAAATCTCCAC
TTGACTGTAGCTCTCCATAACACTTCGCCAGGGTCAAGCTGTGTTATTTTCTTTCAGTGT
TAAACAGAAAGCATCTTAGGAGCATAGTTCAATTATTGATTGAATAGTGGGTTCTATTTG
ACTGTAATTCTAACAAATATACTTCAATGAGTTCATGACCAGAGATGGGCCAACAGAAGG
GTAAAGGTTTCACTCAAGCTTTAAGGCAAATGATCAGACTGAGTTAATAACAGGGATATC
TTCTATTTTTCTGAGAATAATACCATCCCATCCCAGTTGGATAAAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               179-295, + strand, RNAz p=0.505826

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-295, + strand, RNAz p=0.505826

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               61-648, gnl|bosTau2|chr1 (11982748-11983339)
               

               
               61-648, gnl|canFam2|chr31 (16334264-16334785)
               

               
               61-648, gnl|dasNov1|scaffold_52222 (1914-1413)
               

               
               61-648, gnl|echTel1|scaffold_319093 (242917-243424)
               

               
               61-648, gnl|hg17|chr21 (16903212-16903724)
               

               
               61-648, gnl|Hg17|chr21 (16903310-16903893)
               

               
               61-648, gnl|loxAfr1|scaffold_41038 (14610-14110)
               

               
               61-648, gnl|mm7|chr16 (77662868-77663365)
               

               
               61-648, gnl|Mm7|chr16 (77662964-77663544)
               

               
               61-648, gnl|oryCun1|scaffold_181976 (63379-63878)
               

               
               61-648, gnl|panTro1|chr22 (16974909-16975421)
               

               
               61-648, gnl|rheMac2|chr3 (30295645-30295133)
               

               
               61-648, gnl|rn3|chr11 (16463687-16464193)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-648, gnl|bosTau2|chr1 (11982748-11983339)
               

               
               61-648, gnl|canFam2|chr31 (16334264-16334785)
               

               
               61-648, gnl|dasNov1|scaffold_52222 (1914-1413)
               

               
               61-648, gnl|echTel1|scaffold_319093 (242917-243424)
               

               
               61-648, gnl|hg17|chr21 (16903212-16903724)
               

               
               61-648, gnl|Hg17|chr21 (16903310-16903893)
               

               
               61-648, gnl|loxAfr1|scaffold_41038 (14610-14110)
               

               
               61-648, gnl|mm7|chr16 (77662868-77663365)
               

               
               61-648, gnl|Mm7|chr16 (77662964-77663544)
               

               
               61-648, gnl|oryCun1|scaffold_181976 (63379-63878)
               

               
               61-648, gnl|panTro1|chr22 (16974909-16975421)
               

               
               61-648, gnl|rheMac2|chr3 (30295645-30295133)
               

               
               61-648, gnl|rn3|chr11 (16463687-16464193)

	61-648, gnl\|bosTau2\|chr1 (11982748-11983339)
	61-648, gnl\|canFam2\|chr31 (16334264-16334785)
	61-648, gnl\|dasNov1\|scaffold_52222 (1914-1413)
	61-648, gnl\|echTel1\|scaffold_319093 (242917-243424)
	61-648, gnl\|hg17\|chr21 (16903212-16903724)
	61-648, gnl\|Hg17\|chr21 (16903310-16903893)
	61-648, gnl\|loxAfr1\|scaffold_41038 (14610-14110)
	61-648, gnl\|mm7\|chr16 (77662868-77663365)
	61-648, gnl\|Mm7\|chr16 (77662964-77663544)
	61-648, gnl\|oryCun1\|scaffold_181976 (63379-63878)
	61-648, gnl\|panTro1\|chr22 (16974909-16975421)
	61-648, gnl\|rheMac2\|chr3 (30295645-30295133)
	61-648, gnl\|rn3\|chr11 (16463687-16464193)