Ss1.1-Mixc-0026l19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAAATTCCAAGTTGTCATCAATGGCCGAGAGTTTCCCCCAGCTGAAGCTGGCAGCAAG AAAGTGGCCAAGCAGGATGCAGCCATGAAAGCCATGACAGTTCTGCTTGAGGAAGCAAGA GCCCAGGACGGTGGAAGATCAGAAGACGCATACTTCTCTTCCTCGGAGAAGGAGTCCCAG AAGGTAGGTGTCCTGCCCTCTGGGAGGACATCAGTTCCCGCTCCGCGTCTGTGAAGTAGC AGGCCTTGACCCTCTTGAGACCGTCTCCGCCGGCTCAGCCGAGTCTGTCATACTTTCCCA GCCGTCTGCGCACACAGCAAGAAGCAAGGCAAGCAGGAAGCTGCAGATGCGGCCCTCCGC GTCTTGATTGGGGAGAACGAGAAGGCTGAGCGCATGTCAGAGCTGAAAGAGACATTCAGA ATTATTGAGTCGCTCAGAAGAACTATGCTCCTCCTCTCAAGGTCCCCAGAAGCACAGCCA AAGACACTTCATCTCACGGGCAGCACCTTCCACGACCAGATAGCCATGTTGAGCCACCGG TGCTTCAATGCCCTCACCAACAGTTTTCAGCCCTCCTTGCTTGGCCGAAAGATCCTGGCT GCCATTATCATGAAGAAAGACTCTGAAGACATGGGTGTCGTGGTCAGCTTGGGGACGGGG AATCGCTGTGTGAAAGGAGATTCTCTGAGCCTCAAGGGAGAGACGGTCAATGACTGCCAT GCAGAGATCATCTCGCGGAGAGGCTTCATCAGGTTTCTGTACAGCGAGTTAATGAAATAC AATCCCCACACCGCGAAGGATAGCATATTTGAGCCCGCTAGGGGAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAAATTCCAAGTTGTCATCAATGGCCGAGAGTTTCCCCCAGCTGAAGCTGGCAGCAAG AAAGTGGCCAAGCAGGATGCAGCCATGAAAGCCATGACAGTTCTGCTTGAGGAAGCAAGA GCCCAGGACGGTGGAAGATCAGAAGACGCATACTTCTCTTCCTCGGAGAAGGAGTCCCAG AAGGTAGGTGTCCTGCCCTCTGGGAGGACATCAGTTCCCGCTCCGCGTCTGTGAAGTAGC AGGCCTTGACCCTCTTGAGACCGTCTCCGCCGGCTCAGCCGAGTCTGTCATACTTTCCCA GCCGTCTGCGCACACAGCAAGAAGCAAGGCAAGCAGGAAGCTGCAGATGCGGCCCTCCGC GTCTTGATTGGGGAGAACGAGAAGGCTGAGCGCATGTCAGAGCTGAAAGAGACATTCAGA ATTATTGAGTCGCTCAGAAGAACTATGCTCCTCCTCTCAAGGTCCCCAGAAGCACAGCCA AAGACACTTCATCTCACGGGCAGCACCTTCCACGACCAGATAGCCATGTTGAGCCACCGG TGCTTCAATGCCCTCACCAACAGTTTTCAGCCCTCCTTGCTTGGCCGAAAGATCCTGGCT GCCATTATCATGAAGAAAGACTCTGAAGACATGGGTGTCGTGGTCAGCTTGGGGACGGGG AATCGCTGTGTGAAAGGAGATTCTCTGAGCCTCAAGGGAGAGACGGTCAATGACTGCCAT GCAGAGATCATCTCGCGGAGAGGCTTCATCAGGTTTCTGTACAGCGAGTTAATGAAATAC AATCCCCACACCGCGAAGGATAGCATATTTGAGCCCGCTAGGGGAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-236, + strand, RNAz p=0.78716 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-236, + strand, RNAz p=0.78716 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-286, gnl|bosTau2|chr3 (8661490-8661200) | |
| 1-286, gnl|Hg17|chr1 (151384133-151383855) | |
| 1-286, gnl|Mm7|chr3 (89864491-89864757) | |
| 295-489, gnl|bosTau2|chr3 (8651742-8651548) | |
| 295-489, gnl|canFam2|chr7 (45753347-45753145) | |
| 295-489, gnl|danRer3|chr16 (27334660-27334474) | |
| 295-489, gnl|dasNov1|scaffold_31235 (13833-13628) | |
| 295-489, gnl|echTel1|scaffold_294223 (49568-49772) | |
| 295-489, gnl|fr1|chrUn (214446913-214446747) | |
| 295-489, gnl|galGal2|chr10 (3518840-3519018) | |
| 295-489, gnl|hg17|chr1 (151375796-151376001) | |
| 295-489, gnl|Hg17|chr1 (151375924-151375730) | |
| 295-489, gnl|loxAfr1|scaffold_12865 (1862-1657) | |
| 295-489, gnl|mm7|chr3 (89872040-89871834) | |
| 295-489, gnl|Mm7|chr3 (89871910-89872104) | |
| 295-489, gnl|monDom2|scaffold_59 (3439921-3439707) | |
| 295-489, gnl|oryCun1|scaffold_203092 (32860-33063) | |
| 295-489, gnl|panTro1|chr1 (133365052-133365257) | |
| 295-489, gnl|rheMac2|chr1 (133138273-133138478) | |
| 295-489, gnl|rn3|chr2 (181900653-181900447) | |
| 295-489, gnl|tetNig1|chr8 (7954497-7954343) | |
| 295-489, gnl|xenTro1|scaffold_2026 (25927-26145) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-286, gnl|bosTau2|chr3 (8661490-8661200) | |
| 1-286, gnl|Hg17|chr1 (151384133-151383855) | |
| 1-286, gnl|Mm7|chr3 (89864491-89864757) | |
| 295-489, gnl|bosTau2|chr3 (8651742-8651548) | |
| 295-489, gnl|canFam2|chr7 (45753347-45753145) | |
| 295-489, gnl|danRer3|chr16 (27334660-27334474) | |
| 295-489, gnl|dasNov1|scaffold_31235 (13833-13628) | |
| 295-489, gnl|echTel1|scaffold_294223 (49568-49772) | |
| 295-489, gnl|fr1|chrUn (214446913-214446747) | |
| 295-489, gnl|galGal2|chr10 (3518840-3519018) | |
| 295-489, gnl|hg17|chr1 (151375796-151376001) | |
| 295-489, gnl|Hg17|chr1 (151375924-151375730) | |
| 295-489, gnl|loxAfr1|scaffold_12865 (1862-1657) | |
| 295-489, gnl|mm7|chr3 (89872040-89871834) | |
| 295-489, gnl|Mm7|chr3 (89871910-89872104) | |
| 295-489, gnl|monDom2|scaffold_59 (3439921-3439707) | |
| 295-489, gnl|oryCun1|scaffold_203092 (32860-33063) | |
| 295-489, gnl|panTro1|chr1 (133365052-133365257) | |
| 295-489, gnl|rheMac2|chr1 (133138273-133138478) | |
| 295-489, gnl|rn3|chr2 (181900653-181900447) | |
| 295-489, gnl|tetNig1|chr8 (7954497-7954343) | |
| 295-489, gnl|xenTro1|scaffold_2026 (25927-26145) |