Non-Coding RNA Search

Ss1.1-Mixc-0026n07.3

Sequence:


               
               CCTAAGAACCTGCTGCTGGGGCCAGGCAAGCCCAATTAGCCAGTGGTGGTGGCAGCCGAT
GCAGCCACGGTGGCAGCGGCCACCATGGCCATGCCGGAGGTGAAGAAACGGCGGCGGCGG
AAGCAGAAGCTGGCATCTCCCCAGCCGTCCTACGCTGCAGACGCCAATGACAGCAAGGCC
GAGTACTCAGACGTCCTCGCCAAGCTGGCCTTCCTCAACCGCCAGAGCCAGTGCGCCGGG
CGGTGCTCACCACCCCGCTGCTGGACACCCAGTGAGCCAGAGTCCGTGCACCAGGCACCT
GACACCCAGAGCATCTCCCACTTCCTGCATCGCGTGCAGGGCTTCCGACGGCGAGGTGGC
AAAGCACGCGGGTTTGGTGGCCGGGGTGGGGGCCATGCGGCCAATGCAGCCCGATGCTCC
TTCAGTGACTTCTTTGAGGGCATTGGCAAGAAAAAGAAGGTGGTGGCAGTGGCAGTTCCT
GGGGTCGGGGGCCCTGGCCTCACGGAGTTGGGGCACCCACGCAAACGGGGCCGGGGGGAG
GTAGATGCCGTGACTGGGAAGCCCAAACGCAAGAGGCGGTCCCGGAAGAATGGGACTCTG
TTCCCAGAGAGGTGCCCAGTGGCCCGGGCTTTGGGGAGGCGGGGACTGAGTGGGCTGGGG
ACAAGGGTGGTGGCTGGGCCCCTCACCACGGGCACCCAGGCGGGCAAGCTGGCCGAAACT
GTGGGTTCCAGGGGACCGAAGCCCGGGCCTTTGCCTCCACTGGGCTAGAGAGTGGGGCTT
CAGGCCGAGGCAGCTACTATAGCACGGCTGCACCTGCGGGCCAGACTGAGCTCAGCCAGG
AGCGCCAAAACCTCTTCACCGGCTATTTTCGCTCCCTCCTCGATTCGGATGACTCCTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAAGAACCTGCTGCTGGGGCCAGGCAAGCCCAATTAGCCAGTGGTGGTGGCAGCCGAT
GCAGCCACGGTGGCAGCGGCCACCATGGCCATGCCGGAGGTGAAGAAACGGCGGCGGCGG
AAGCAGAAGCTGGCATCTCCCCAGCCGTCCTACGCTGCAGACGCCAATGACAGCAAGGCC
GAGTACTCAGACGTCCTCGCCAAGCTGGCCTTCCTCAACCGCCAGAGCCAGTGCGCCGGG
CGGTGCTCACCACCCCGCTGCTGGACACCCAGTGAGCCAGAGTCCGTGCACCAGGCACCT
GACACCCAGAGCATCTCCCACTTCCTGCATCGCGTGCAGGGCTTCCGACGGCGAGGTGGC
AAAGCACGCGGGTTTGGTGGCCGGGGTGGGGGCCATGCGGCCAATGCAGCCCGATGCTCC
TTCAGTGACTTCTTTGAGGGCATTGGCAAGAAAAAGAAGGTGGTGGCAGTGGCAGTTCCT
GGGGTCGGGGGCCCTGGCCTCACGGAGTTGGGGCACCCACGCAAACGGGGCCGGGGGGAG
GTAGATGCCGTGACTGGGAAGCCCAAACGCAAGAGGCGGTCCCGGAAGAATGGGACTCTG
TTCCCAGAGAGGTGCCCAGTGGCCCGGGCTTTGGGGAGGCGGGGACTGAGTGGGCTGGGG
ACAAGGGTGGTGGCTGGGCCCCTCACCACGGGCACCCAGGCGGGCAAGCTGGCCGAAACT
GTGGGTTCCAGGGGACCGAAGCCCGGGCCTTTGCCTCCACTGGGCTAGAGAGTGGGGCTT
CAGGCCGAGGCAGCTACTATAGCACGGCTGCACCTGCGGGCCAGACTGAGCTCAGCCAGG
AGCGCCAAAACCTCTTCACCGGCTATTTTCGCTCCCTCCTCGATTCGGATGACTCCTCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50804506|ref|XP_428717.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50804506|ref|XP_428717.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.884134
               

               
               520-678, + strand, RNAz p=0.909519

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.884134
               

               
               520-678, + strand, RNAz p=0.909519

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr2 (78999169-79000069)
               

               
               1-900, gnl|Hg17|chr1 (27561118-27560218)
               

               
               1-900, gnl|Mm7|chr4 (132441524-132442421)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr2 (78999169-79000069)
               

               
               1-900, gnl|Hg17|chr1 (27561118-27560218)
               

               
               1-900, gnl|Mm7|chr4 (132441524-132442421)

	40-159, - strand, RNAz p=0.884134
	520-678, + strand, RNAz p=0.909519

	1-900, gnl\|bosTau2\|chr2 (78999169-79000069)
	1-900, gnl\|Hg17\|chr1 (27561118-27560218)
	1-900, gnl\|Mm7\|chr4 (132441524-132442421)