Non-Coding RNA Search

Ss1.1-Mixc-0026p09.5

Sequence:


               
               TACCCGCTCCTGTCGCTGCCTGTGCCGCCCCGCCGGGTGGGGGTCTTCCTGGATTACGAG
GCCCACGACATCTCGTTCTACAACGTGACCGACAACGGCGCCCACATTTTCACTTTCCCC
CACTACCCCTTCCTGGGGCGCCTCCTGCCCTATTTCAGTCCTTGCTACAGCATCGGGGCC
AACAACACCGCTCCCCTGACCATCTGCTCCCTGGACGGGGAGGACTAGGAGGGCCACCGT
TCCAGCCACAGGCCTCGGCACTTCGCCTGGCCCGCAGGGATCTTGCAGGACCTCACCCCC
ACAAGGACCCCTTGGAACTGAGCAGAGCCCGGAATCTGCCTGACCCGGTGGCCTGTCACG
GCTGGGCCAAGTCTCCCATAAAGCACCCACGCAAGAAAGCTGCGGCTCAGCCAAGGGAAC
GTTGTTCCCCCGAGGGAAGTGTGACAAGGCTTGTGGTGAGTATCAGAGTGGTCCCAGGAC
CTGGACAGTCCTTTCTGCAGCTCACGCCCGTTTCCCATCCCTGTCATCGCCGCAGCTGAG
TCAGGAGGACGGGGACATCGACCCCAGCAAGCCAAAGGACGCTTCCCGTTGCCAGATGAC
ATGCTGATGCCAGCAGGAGGATGCTTCACCTGAGGTTTGCTACTGCTCAGAAACCCGTGT
TTCACCCCAACTCTGACCTCCCAACTAGAGAAACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCCGCTCCTGTCGCTGCCTGTGCCGCCCCGCCGGGTGGGGGTCTTCCTGGATTACGAG
GCCCACGACATCTCGTTCTACAACGTGACCGACAACGGCGCCCACATTTTCACTTTCCCC
CACTACCCCTTCCTGGGGCGCCTCCTGCCCTATTTCAGTCCTTGCTACAGCATCGGGGCC
AACAACACCGCTCCCCTGACCATCTGCTCCCTGGACGGGGAGGACTAGGAGGGCCACCGT
TCCAGCCACAGGCCTCGGCACTTCGCCTGGCCCGCAGGGATCTTGCAGGACCTCACCCCC
ACAAGGACCCCTTGGAACTGAGCAGAGCCCGGAATCTGCCTGACCCGGTGGCCTGTCACG
GCTGGGCCAAGTCTCCCATAAAGCACCCACGCAAGAAAGCTGCGGCTCAGCCAAGGGAAC
GTTGTTCCCCCGAGGGAAGTGTGACAAGGCTTGTGGTGAGTATCAGAGTGGTCCCAGGAC
CTGGACAGTCCTTTCTGCAGCTCACGCCCGTTTCCCATCCCTGTCATCGCCGCAGCTGAG
TCAGGAGGACGGGGACATCGACCCCAGCAAGCCAAAGGACGCTTCCCGTTGCCAGATGAC
ATGCTGATGCCAGCAGGAGGATGCTTCACCTGAGGTTTGCTACTGCTCAGAAACCCGTGT
TTCACCCCAACTCTGACCTCCCAACTAGAGAAACGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               240-336, - strand, RNAz p=0.606307

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-336, - strand, RNAz p=0.606307

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-526, gnl|bosTau2|chr15 (32069636-32070181)
               

               
               1-526, gnl|Hg17|chr11 (4578309-4577744)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-526, gnl|bosTau2|chr15 (32069636-32070181)
               

               
               1-526, gnl|Hg17|chr11 (4578309-4577744)

	1-526, gnl\|bosTau2\|chr15 (32069636-32070181)
	1-526, gnl\|Hg17\|chr11 (4578309-4577744)