Non-Coding RNA Search

Ss1.1-Mixc-0027d04.3

Sequence:


               
               GGGAGCGGCGCAGCATCTTCCTGCTCACCATCCTGGCAGCCCTGGCCCTACTGGTACTCA
TTCTGCTGTGTCTGCTCATCTACTACTGCAGAAGGCGCTGCCTGAAGCCGAGGCAACAGC
ACCGAAAGCTGCAGCTCTCCGGTCCCTCTGACGGAAACAAACGAGACCAGGCCACCTCGA
TGTCTCAGCTCCACCTCATCTGTGGGGGCCCCCTGGAGCCCGCCACGTCGGGGGATCCCG
AGGCTCCGCCTCCAGGCCCCCTCCACTCGGCCTTCTCCAGTTCCCGCGACTTGGCCGCCT
CCAGGGACGACTTCTTCCGCGCCAAGCCGCGCTCCGCCAGCCGTCCGGCCGCCGAGCCCG
CAGGTGCCCGCGGGGGCGAGGGCGCCGGGCTCAAGGGCGCCCGTTCCGTCGAGGGTCCTG
GAGGGCTGGAGCCAGGCCTGGAGGAGTACCGGCGGGGGCCCCCGGGGACCGCGACCTTCC
TGCAGGAGCCGCCTCGCCGCCGCCGCCTTCGAGCACTACTGGGGCACACAAGGGGGCGGC
AGAGAGCAAGACCCCCGACTTCCTGCTGTCGCAGTCGGTGGACCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCGGCGCAGCATCTTCCTGCTCACCATCCTGGCAGCCCTGGCCCTACTGGTACTCA
TTCTGCTGTGTCTGCTCATCTACTACTGCAGAAGGCGCTGCCTGAAGCCGAGGCAACAGC
ACCGAAAGCTGCAGCTCTCCGGTCCCTCTGACGGAAACAAACGAGACCAGGCCACCTCGA
TGTCTCAGCTCCACCTCATCTGTGGGGGCCCCCTGGAGCCCGCCACGTCGGGGGATCCCG
AGGCTCCGCCTCCAGGCCCCCTCCACTCGGCCTTCTCCAGTTCCCGCGACTTGGCCGCCT
CCAGGGACGACTTCTTCCGCGCCAAGCCGCGCTCCGCCAGCCGTCCGGCCGCCGAGCCCG
CAGGTGCCCGCGGGGGCGAGGGCGCCGGGCTCAAGGGCGCCCGTTCCGTCGAGGGTCCTG
GAGGGCTGGAGCCAGGCCTGGAGGAGTACCGGCGGGGGCCCCCGGGGACCGCGACCTTCC
TGCAGGAGCCGCCTCGCCGCCGCCGCCTTCGAGCACTACTGGGGCACACAAGGGGGCGGC
AGAGAGCAAGACCCCCGACTTCCTGCTGTCGCAGTCGGTGGACCAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-323, - strand, RNAz p=0.936006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-323, - strand, RNAz p=0.936006

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               194-303, - strand, RNAmicro p=0.957245

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               194-303, - strand, RNAmicro p=0.957245

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               86-323, gnl|bosTau2|chr19 (37957822-37958059)
               

               
               86-323, gnl|Hg17|chr17 (39788090-39787854)
               

               
               86-323, gnl|Mm7|chr11 (102547954-102547720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-323, gnl|bosTau2|chr19 (37957822-37958059)
               

               
               86-323, gnl|Hg17|chr17 (39788090-39787854)
               

               
               86-323, gnl|Mm7|chr11 (102547954-102547720)

	86-323, gnl\|bosTau2\|chr19 (37957822-37958059)
	86-323, gnl\|Hg17\|chr17 (39788090-39787854)
	86-323, gnl\|Mm7\|chr11 (102547954-102547720)