Non-Coding RNA Search

Ss1.1-Mixc-0027f12.5

Sequence:


               
               GCGGACGGGGGCCAGAGGCTGAGCTGGGGGAGCCAGCCGCGCGCACAGCTCTGCCCGCCA
CCCCCGGAGCGGATCCCTGGCCGCCCCTCGGCTCTCCGCAGGGTTCTAGCAGAGCCCCCA
CCCCCCACCCCGGGGTGCCCATCAATTTCCTTGGGTGACTACAGCGTGTTTTGTTTTTCT
TTCTTCTTTCCCTCCCCGTGTGCCCTTCTCCAGGATGGCAGAGGCGGAATTGCACAAGGA
AAGGCTGCAAGCCATAGCAGAAAAAAGAAAGAGGCAGACGGAAATAGAAGGCAAGCGCCA
AGAGCTTGACGAGCAGATACTTCTGTTGCAGCATTCTAAGTCCAAAGTGCTTCGGGAAAA
ATGGCTGCTGCAGGGTATACCCGCTGGAACTGCCGAAGAGGAGGAAGCCAGGCGGCGGCA
GTCTGAGGAGGATGAGTTCAGAGTCAAACAACTTGAAGATAACATTCAGAGGCTGGAGCA
GGAAATACAAGCCTTAGAAAGTGAAGAATCCCAGATATCTGCCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGGGGGCCAGAGGCTGAGCTGGGGGAGCCAGCCGCGCGCACAGCTCTGCCCGCCA
CCCCCGGAGCGGATCCCTGGCCGCCCCTCGGCTCTCCGCAGGGTTCTAGCAGAGCCCCCA
CCCCCCACCCCGGGGTGCCCATCAATTTCCTTGGGTGACTACAGCGTGTTTTGTTTTTCT
TTCTTCTTTCCCTCCCCGTGTGCCCTTCTCCAGGATGGCAGAGGCGGAATTGCACAAGGA
AAGGCTGCAAGCCATAGCAGAAAAAAGAAAGAGGCAGACGGAAATAGAAGGCAAGCGCCA
AGAGCTTGACGAGCAGATACTTCTGTTGCAGCATTCTAAGTCCAAAGTGCTTCGGGAAAA
ATGGCTGCTGCAGGGTATACCCGCTGGAACTGCCGAAGAGGAGGAAGCCAGGCGGCGGCA
GTCTGAGGAGGATGAGTTCAGAGTCAAACAACTTGAAGATAACATTCAGAGGCTGGAGCA
GGAAATACAAGCCTTAGAAAGTGAAGAATCCCAGATATCTGCCAAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34868422|ref|XP_238396.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34868422|ref|XP_238396.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-472, + strand, RNAz p=0.745375

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-472, + strand, RNAz p=0.745375

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               339-472, gnl|bosTau2|chr8 (53778245-53778112)
               

               
               339-472, gnl|Hg17|chr9 (109722384-109722517)
               

               
               339-472, gnl|Mm7|chr4 (57689377-57689510)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               339-472, gnl|bosTau2|chr8 (53778245-53778112)
               

               
               339-472, gnl|Hg17|chr9 (109722384-109722517)
               

               
               339-472, gnl|Mm7|chr4 (57689377-57689510)

	339-472, gnl\|bosTau2\|chr8 (53778245-53778112)
	339-472, gnl\|Hg17\|chr9 (109722384-109722517)
	339-472, gnl\|Mm7\|chr4 (57689377-57689510)