Non-Coding RNA Search

Ss1.1-Mixc-0027l17.3

Sequence:


               
               AAAAACTTAATTTGTAAGGAAACAGAGGTATCCTGGCCCTCTGCAAAATTAACCTTTGAA
CTATATAAGTGAAAATTATTATAACTAGTCTTCTAGAACTGAAATTCCAAGATTTTTAAA
ACTCAAGGCAGTTTAACATTATTAGGCATTTTATGTTGTCAAAGAGTGCATCAGGAGTTG
TGTATTAGGAGCTAATGAATGTAATCAAAATATATCTAGACTTGGGAGCAATTCCTGTTG
GATATCAGCAGGACTACTGGGAAGGTACCAAATAAAATTAAAATGGTCATTTTCTGGGGT
AAGTATGTACTTTGAATTTGATGTTGAAATCTTCAGTGCATCAAGGATAAAGAGGTAGGG
TTAGGCCTTATATTTGAAGTAGTGATAAACAGTGTGACAGAGATTGTAATGAGTAAGAGG
GAGAAGTGAACAGTTAGGGTACTATTAGGAAATGTATGTGAGAAATAGTTTTAGAATAAT
GCCTTGAAAAGTAGGCTGAGAAACTTAGAGGAGGTACTCTAGCAGGATGCTGATAGGTTT
CCAGTGTAAAATGACATCATCAAAGTGGCCTTTGAATAGGAAGATATAATTGTAGTATAT
AAAAAACAGATTGGAATGATAAGCAGAGTGCCCCTACCCTACAAAAAGGGTAAAGAATTA
TTAGAGGCTCAGATCCTGCGTTGCTATGGCTGTGTCGCAGGCCAGCAGCTGTAGTTCCAA
TTCAACTCCTAGCCTCAGAACTTCCATTTGCCACAGGCGCGGCCCTAAAAAAGCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACTTAATTTGTAAGGAAACAGAGGTATCCTGGCCCTCTGCAAAATTAACCTTTGAA
CTATATAAGTGAAAATTATTATAACTAGTCTTCTAGAACTGAAATTCCAAGATTTTTAAA
ACTCAAGGCAGTTTAACATTATTAGGCATTTTATGTTGTCAAAGAGTGCATCAGGAGTTG
TGTATTAGGAGCTAATGAATGTAATCAAAATATATCTAGACTTGGGAGCAATTCCTGTTG
GATATCAGCAGGACTACTGGGAAGGTACCAAATAAAATTAAAATGGTCATTTTCTGGGGT
AAGTATGTACTTTGAATTTGATGTTGAAATCTTCAGTGCATCAAGGATAAAGAGGTAGGG
TTAGGCCTTATATTTGAAGTAGTGATAAACAGTGTGACAGAGATTGTAATGAGTAAGAGG
GAGAAGTGAACAGTTAGGGTACTATTAGGAAATGTATGTGAGAAATAGTTTTAGAATAAT
GCCTTGAAAAGTAGGCTGAGAAACTTAGAGGAGGTACTCTAGCAGGATGCTGATAGGTTT
CCAGTGTAAAATGACATCATCAAAGTGGCCTTTGAATAGGAAGATATAATTGTAGTATAT
AAAAAACAGATTGGAATGATAAGCAGAGTGCCCCTACCCTACAAAAAGGGTAAAGAATTA
TTAGAGGCTCAGATCCTGCGTTGCTATGGCTGTGTCGCAGGCCAGCAGCTGTAGTTCCAA
TTCAACTCCTAGCCTCAGAACTTCCATTTGCCACAGGCGCGGCCCTAAAAAAGCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               163-278, - strand, RNAz p=0.61894

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-278, - strand, RNAz p=0.61894

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               7-309, gnl|bosTau2|chr11 (61317236-61316934)
               

               
               7-309, gnl|canFam2|chr17 (18255995-18256293)
               

               
               7-309, gnl|dasNov1|scaffold_27063 (33900-33585)
               

               
               7-309, gnl|hg17|chr2 (20387185-20387488)
               

               
               7-309, gnl|Hg17|chr2 (20387547-20387296)
               

               
               7-309, gnl|panTro1|chr12 (21212989-21213294)
               

               
               7-309, gnl|rheMac2|chr13 (20167709-20168014)
               


               
               512-665, gnl|bosTau2|chr11 (61316790-61316639)
               

               
               512-665, gnl|canFam2|chr17 (18255566-18255994)
               

               
               512-665, gnl|dasNov1|scaffold_27063 (34398-33901)
               

               
               512-665, gnl|hg17|chr2 (20386652-20387184)
               

               
               512-665, gnl|Hg17|chr2 (20387121-20386924)
               

               
               512-665, gnl|oryCun1|scaffold_140407 (6685-6182)
               

               
               512-665, gnl|panTro1|chr12 (21212452-21212988)
               

               
               512-665, gnl|rheMac2|chr13 (20167178-20167708)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-309, gnl|bosTau2|chr11 (61317236-61316934)
               

               
               7-309, gnl|canFam2|chr17 (18255995-18256293)
               

               
               7-309, gnl|dasNov1|scaffold_27063 (33900-33585)
               

               
               7-309, gnl|hg17|chr2 (20387185-20387488)
               

               
               7-309, gnl|Hg17|chr2 (20387547-20387296)
               

               
               7-309, gnl|panTro1|chr12 (21212989-21213294)
               

               
               7-309, gnl|rheMac2|chr13 (20167709-20168014)
               


               
               512-665, gnl|bosTau2|chr11 (61316790-61316639)
               

               
               512-665, gnl|canFam2|chr17 (18255566-18255994)
               

               
               512-665, gnl|dasNov1|scaffold_27063 (34398-33901)
               

               
               512-665, gnl|hg17|chr2 (20386652-20387184)
               

               
               512-665, gnl|Hg17|chr2 (20387121-20386924)
               

               
               512-665, gnl|oryCun1|scaffold_140407 (6685-6182)
               

               
               512-665, gnl|panTro1|chr12 (21212452-21212988)
               

               
               512-665, gnl|rheMac2|chr13 (20167178-20167708)

	7-309, gnl\|bosTau2\|chr11 (61317236-61316934)
	7-309, gnl\|canFam2\|chr17 (18255995-18256293)
	7-309, gnl\|dasNov1\|scaffold_27063 (33900-33585)
	7-309, gnl\|hg17\|chr2 (20387185-20387488)
	7-309, gnl\|Hg17\|chr2 (20387547-20387296)
	7-309, gnl\|panTro1\|chr12 (21212989-21213294)
	7-309, gnl\|rheMac2\|chr13 (20167709-20168014)

	512-665, gnl\|bosTau2\|chr11 (61316790-61316639)
	512-665, gnl\|canFam2\|chr17 (18255566-18255994)
	512-665, gnl\|dasNov1\|scaffold_27063 (34398-33901)
	512-665, gnl\|hg17\|chr2 (20386652-20387184)
	512-665, gnl\|Hg17\|chr2 (20387121-20386924)
	512-665, gnl\|oryCun1\|scaffold_140407 (6685-6182)
	512-665, gnl\|panTro1\|chr12 (21212452-21212988)
	512-665, gnl\|rheMac2\|chr13 (20167178-20167708)