Ss1.1-Mixc-0027m02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGGAGTTCCTGCCGGACGTCTTGGAGAGTCATCCTCTTGGCTCTACCTACTCTTCTCT CTCCGGGTCTCACCCAACCAAACCAAAGACCATGGTGCACTGTGCCGGCTGCAAAAGGCC CATCCTGGACCGCTTCCTCTTGAACGTGCTGGACAGGGCCTGGCACGTCAAGTGCGTCCA GTGCTGTGAATGTAAATGCAACCTGACAGAGAAGTGCTTCTCCCGGGAAGGCAAGCTCTA CTGCAAGAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCCGGCTGCGCGCAGGGCAT CTCCCCCAGCGACCTGGTGCGGAGAGCGCGAAGCAAAGTGTTTCACCTGAACTGCTTCAC CTGCATGATGTGCAACAAGCAGCTCTCCACCGGGGAGGAGCTTTATATCATCGATGAAAA CAAGTTCGTCTGCAAAGAGGATTACCTAAGCAACAGCAGCGTCGCCAAAGAGAACAGCCT CCACTCGGCCACCACGGGCAGTGACCCCAGTTTGTCTCCGGACTCCCAAGACCCGTCGCA GGACGACGCCAAGGACTCAGAGAGCGCCAATGTGTCGGACAAGGAAGGCGGCAGCAATGA GAACGATGACCAGAACCTGGGGGCCAAGCGGAGGGGGCCGCGCACCACCATCAAAGCCAA GCAGCTGGAGACGTTGAAGGCCGCCTTCGCCGCTACACCCAAGCCCACGCGCCACATCCG CGAGCAGCTGGCTCAAGAGACCGGCCTCAATATGCGTGTCATCCAGGTCTGGTTCCAGAA CCGACGCTCCAAGGAAAGGAGGATGAAACAGCTGAGCGCCCTGGGCGCCCGACGCCACGC CTTCTTCCGCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGGAGTTCCTGCCGGACGTCTTGGAGAGTCATCCTCTTGGCTCTACCTACTCTTCTCT CTCCGGGTCTCACCCAACCAAACCAAAGACCATGGTGCACTGTGCCGGCTGCAAAAGGCC CATCCTGGACCGCTTCCTCTTGAACGTGCTGGACAGGGCCTGGCACGTCAAGTGCGTCCA GTGCTGTGAATGTAAATGCAACCTGACAGAGAAGTGCTTCTCCCGGGAAGGCAAGCTCTA CTGCAAGAACGACTTCTTCCGGTGTTTCGGTACCAAATGCGCCGGCTGCGCGCAGGGCAT CTCCCCCAGCGACCTGGTGCGGAGAGCGCGAAGCAAAGTGTTTCACCTGAACTGCTTCAC CTGCATGATGTGCAACAAGCAGCTCTCCACCGGGGAGGAGCTTTATATCATCGATGAAAA CAAGTTCGTCTGCAAAGAGGATTACCTAAGCAACAGCAGCGTCGCCAAAGAGAACAGCCT CCACTCGGCCACCACGGGCAGTGACCCCAGTTTGTCTCCGGACTCCCAAGACCCGTCGCA GGACGACGCCAAGGACTCAGAGAGCGCCAATGTGTCGGACAAGGAAGGCGGCAGCAATGA GAACGATGACCAGAACCTGGGGGCCAAGCGGAGGGGGCCGCGCACCACCATCAAAGCCAA GCAGCTGGAGACGTTGAAGGCCGCCTTCGCCGCTACACCCAAGCCCACGCGCCACATCCG CGAGCAGCTGGCTCAAGAGACCGGCCTCAATATGCGTGTCATCCAGGTCTGGTTCCAGAA CCGACGCTCCAAGGAAAGGAGGATGAAACAGCTGAGCGCCCTGGGCGCCCGACGCCACGC CTTCTTCCGCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 299-418, - strand, RNAz p=0.758843 | |
| 300-419, - strand, RNAz p=0.871239 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 299-418, - strand, RNAz p=0.758843 | |
| 300-419, - strand, RNAz p=0.871239 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 255-488, gnl|bosTau2|chr17 (38086421-38086191) | |
| 255-488, gnl|canFam2|chr26 (13806320-13806516) | |
| 255-488, gnl|danRer3|chr21 (5876251-5876055) | |
| 255-488, gnl|dasNov1|scaffold_61488 (7377-7573) | |
| 255-488, gnl|echTel1|scaffold_266163 (21748-21947) | |
| 255-488, gnl|fr1|chrUn (36102724-36102528) | |
| 255-488, gnl|galGal2|chr15 (12357013-12356817) | |
| 255-488, gnl|hg17|chr12 (112369643-112369839) | |
| 255-488, gnl|Hg17|chr12 (112369877-112369647) | |
| 255-488, gnl|loxAfr1|scaffold_25460 (2242-2046) | |
| 255-488, gnl|mm7|chr5 (119668706-119668510) | |
| 255-488, gnl|Mm7|chr5 (119668470-119668700) | |
| 255-488, gnl|monDom2|scaffold_110 (1849541-1849737) | |
| 255-488, gnl|oryCun1|scaffold_202326 (61932-61736) | |
| 255-488, gnl|panTro1|chr10 (115075651-115075848) | |
| 255-488, gnl|rheMac2|chr11 (114393502-114393698) | |
| 255-488, gnl|rn3|chr12 (37192916-37193112) | |
| 255-488, gnl|tetNig1|chrUn_random (1498540-1498344) | |
| 255-488, gnl|xenTro1|scaffold_891 (189147-189343) | |
| 261-444, gnl|bosTau2|chr16 (42014887-42015070) | |
| 261-444, gnl|canFam2|chr7 (16773790-16774000) | |
| 261-444, gnl|danRer3|chrNA (171743396-171743606) | |
| 261-444, gnl|dasNov1|scaffold_3586 (43862-44072) | |
| 261-444, gnl|echTel1|scaffold_203042 (5799-5589) | |
| 261-444, gnl|fr1|chrUn (101047477-101047267) | |
| 261-444, gnl|galGal2|chr8 (5997339-5997129) | |
| 261-444, gnl|hg17|chr1 (176967182-176967392) | |
| 261-444, gnl|Hg17|chr1 (176967183-176967366) | |
| 261-444, gnl|loxAfr1|scaffold_19088 (37603-37412) | |
| 261-444, gnl|mm7|chr1 (155672210-155672000) | |
| 261-444, gnl|Mm7|chr1 (155672207-155672024) | |
| 261-444, gnl|monDom2|scaffold_16 (33202738-33202948) | |
| 261-444, gnl|oryCun1|scaffold_205951 (58391-58181) | |
| 261-444, gnl|panTro1|chr1 (159336261-159336471) | |
| 261-444, gnl|rheMac2|chr1 (190463674-190463464) | |
| 261-444, gnl|rn3|chr13 (70690331-70690121) | |
| 261-444, gnl|tetNig1|chr1 (11220997-11221205) | |
| 261-444, gnl|xenTro1|scaffold_236 (413393-413183) | |
| 503-768, gnl|bosTau2|chr17 (38085525-38085260) | |
| 503-768, gnl|canFam2|chr26 (13805354-13805653) | |
| 503-768, gnl|danRer3|chr21 (5879247-5878962) | |
| 503-768, gnl|dasNov1|scaffold_61488 (6475-6774) | |
| 503-768, gnl|echTel1|scaffold_306809 (5702-6001) | |
| 503-768, gnl|fr1|chrUn (36103340-36103047) | |
| 503-768, gnl|galGal2|chr19 (7944511-7944215) | |
| 503-768, gnl|hg17|chr12 (112368633-112368933) | |
| 503-768, gnl|Hg17|chr12 (112368915-112368650) | |
| 503-768, gnl|loxAfr1|scaffold_25460 (3170-2871) | |
| 503-768, gnl|mm7|chr5 (119669631-119669335) | |
| 503-768, gnl|Mm7|chr5 (119669351-119669616) | |
| 503-768, gnl|monDom2|scaffold_110 (1848337-1848623) | |
| 503-768, gnl|oryCun1|scaffold_202326 (62786-62487) | |
| 503-768, gnl|panTro1|chr10 (115074641-115074941) | |
| 503-768, gnl|rheMac2|chr11 (114392510-114392810) | |
| 503-768, gnl|rn3|chr12 (37192021-37192317) | |
| 503-768, gnl|tetNig1|chrUn_random (1499203-1498906) | |
| 503-768, gnl|xenTro1|scaffold_891 (184854-185136) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 255-488, gnl|bosTau2|chr17 (38086421-38086191) | |
| 255-488, gnl|canFam2|chr26 (13806320-13806516) | |
| 255-488, gnl|danRer3|chr21 (5876251-5876055) | |
| 255-488, gnl|dasNov1|scaffold_61488 (7377-7573) | |
| 255-488, gnl|echTel1|scaffold_266163 (21748-21947) | |
| 255-488, gnl|fr1|chrUn (36102724-36102528) | |
| 255-488, gnl|galGal2|chr15 (12357013-12356817) | |
| 255-488, gnl|hg17|chr12 (112369643-112369839) | |
| 255-488, gnl|Hg17|chr12 (112369877-112369647) | |
| 255-488, gnl|loxAfr1|scaffold_25460 (2242-2046) | |
| 255-488, gnl|mm7|chr5 (119668706-119668510) | |
| 255-488, gnl|Mm7|chr5 (119668470-119668700) | |
| 255-488, gnl|monDom2|scaffold_110 (1849541-1849737) | |
| 255-488, gnl|oryCun1|scaffold_202326 (61932-61736) | |
| 255-488, gnl|panTro1|chr10 (115075651-115075848) | |
| 255-488, gnl|rheMac2|chr11 (114393502-114393698) | |
| 255-488, gnl|rn3|chr12 (37192916-37193112) | |
| 255-488, gnl|tetNig1|chrUn_random (1498540-1498344) | |
| 255-488, gnl|xenTro1|scaffold_891 (189147-189343) | |
| 261-444, gnl|bosTau2|chr16 (42014887-42015070) | |
| 261-444, gnl|canFam2|chr7 (16773790-16774000) | |
| 261-444, gnl|danRer3|chrNA (171743396-171743606) | |
| 261-444, gnl|dasNov1|scaffold_3586 (43862-44072) | |
| 261-444, gnl|echTel1|scaffold_203042 (5799-5589) | |
| 261-444, gnl|fr1|chrUn (101047477-101047267) | |
| 261-444, gnl|galGal2|chr8 (5997339-5997129) | |
| 261-444, gnl|hg17|chr1 (176967182-176967392) | |
| 261-444, gnl|Hg17|chr1 (176967183-176967366) | |
| 261-444, gnl|loxAfr1|scaffold_19088 (37603-37412) | |
| 261-444, gnl|mm7|chr1 (155672210-155672000) | |
| 261-444, gnl|Mm7|chr1 (155672207-155672024) | |
| 261-444, gnl|monDom2|scaffold_16 (33202738-33202948) | |
| 261-444, gnl|oryCun1|scaffold_205951 (58391-58181) | |
| 261-444, gnl|panTro1|chr1 (159336261-159336471) | |
| 261-444, gnl|rheMac2|chr1 (190463674-190463464) | |
| 261-444, gnl|rn3|chr13 (70690331-70690121) | |
| 261-444, gnl|tetNig1|chr1 (11220997-11221205) | |
| 261-444, gnl|xenTro1|scaffold_236 (413393-413183) | |
| 503-768, gnl|bosTau2|chr17 (38085525-38085260) | |
| 503-768, gnl|canFam2|chr26 (13805354-13805653) | |
| 503-768, gnl|danRer3|chr21 (5879247-5878962) | |
| 503-768, gnl|dasNov1|scaffold_61488 (6475-6774) | |
| 503-768, gnl|echTel1|scaffold_306809 (5702-6001) | |
| 503-768, gnl|fr1|chrUn (36103340-36103047) | |
| 503-768, gnl|galGal2|chr19 (7944511-7944215) | |
| 503-768, gnl|hg17|chr12 (112368633-112368933) | |
| 503-768, gnl|Hg17|chr12 (112368915-112368650) | |
| 503-768, gnl|loxAfr1|scaffold_25460 (3170-2871) | |
| 503-768, gnl|mm7|chr5 (119669631-119669335) | |
| 503-768, gnl|Mm7|chr5 (119669351-119669616) | |
| 503-768, gnl|monDom2|scaffold_110 (1848337-1848623) | |
| 503-768, gnl|oryCun1|scaffold_202326 (62786-62487) | |
| 503-768, gnl|panTro1|chr10 (115074641-115074941) | |
| 503-768, gnl|rheMac2|chr11 (114392510-114392810) | |
| 503-768, gnl|rn3|chr12 (37192021-37192317) | |
| 503-768, gnl|tetNig1|chrUn_random (1499203-1498906) | |
| 503-768, gnl|xenTro1|scaffold_891 (184854-185136) |