Ss1.1-Mixc-0027n24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCTAGGAAGATTGCGCACCCGGCAATGTTCCCTCGAAGGGGCAGTGGCGGTGGCAGCG CCTCTGCTCTCAGTGCAGCAGGTACCGGCGTTGGTAGTAGTGCCCCATCTTCCGAGGATT TTCCGCCTCCGTCGCTGCTCCAGCCGCCACCTCCTGTAGCATCTTCTCTGTCGGGACCAC AGCCTCCGCCTCCACAAAGCCTGAACCTCCTTTCGCAGGCTCAGCTGCAGGCACAGCCTC TTGCACCAGGCGGAACCCAGATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTGACCC CGGCTCAGATCTCCGCCAGCATCAGCTCTAACAACAGCATCGCAGAGGACACCGAGAGCT ACGATGATCTGGATGAATCGCACACGGAAGATCTGTCTTCTTCCGAGATCCTTGATGTGT CACTTTCCAGGGCTACTGACTTAGGGGAGCCCGAACGCAGCTCCTCGGAAGAGACGCTCA ATAACTTCCAGGAAGCCGAGACCCCTGGGGCCGTCTCTCCCAACCAGCCCCACCTTCCTC AGCCTCATTTGCCTTCCCTTCCACAACAGAATGTTGTGATCAATGGGAATGCTCATCCAC ACCCCCTCCATCACCACCATCACATTCACCATGGGCACCACCTCCACCACGGGCACCACC ATCCATCCCATGCCGGTGTGACTAGTACATCCATTCCCGGAGGGCACCCTCAAGTCCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCTAGGAAGATTGCGCACCCGGCAATGTTCCCTCGAAGGGGCAGTGGCGGTGGCAGCG CCTCTGCTCTCAGTGCAGCAGGTACCGGCGTTGGTAGTAGTGCCCCATCTTCCGAGGATT TTCCGCCTCCGTCGCTGCTCCAGCCGCCACCTCCTGTAGCATCTTCTCTGTCGGGACCAC AGCCTCCGCCTCCACAAAGCCTGAACCTCCTTTCGCAGGCTCAGCTGCAGGCACAGCCTC TTGCACCAGGCGGAACCCAGATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTGACCC CGGCTCAGATCTCCGCCAGCATCAGCTCTAACAACAGCATCGCAGAGGACACCGAGAGCT ACGATGATCTGGATGAATCGCACACGGAAGATCTGTCTTCTTCCGAGATCCTTGATGTGT CACTTTCCAGGGCTACTGACTTAGGGGAGCCCGAACGCAGCTCCTCGGAAGAGACGCTCA ATAACTTCCAGGAAGCCGAGACCCCTGGGGCCGTCTCTCCCAACCAGCCCCACCTTCCTC AGCCTCATTTGCCTTCCCTTCCACAACAGAATGTTGTGATCAATGGGAATGCTCATCCAC ACCCCCTCCATCACCACCATCACATTCACCATGGGCACCACCTCCACCACGGGCACCACC ATCCATCCCATGCCGGTGTGACTAGTACATCCATTCCCGGAGGGCACCCTCAAGTCCCGG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-239, - strand, RNAz p=0.977068 | |
| 440-679, - strand, RNAz p=0.986489 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-239, - strand, RNAz p=0.977068 | |
| 440-679, - strand, RNAz p=0.986489 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 523-618, - strand, RNAmicro p=0.994271 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 52-239, DA093588 BRACE3 Homo sapiens cDNA clone BRACE3002491 5', mRNA (dbj|DA093588.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA148303 BRAMY2 Homo sapiens cDNA clone BRAMY2005514 5', mRNA (dbj|DA148303.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA229521 BRAWH3 Homo sapiens cDNA clone BRAWH3024183 5', mRNA (dbj|DA229521.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA415450 BRTHA3 Homo sapiens cDNA clone BRTHA3024238 5', mRNA (dbj|DA415450.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA587359 HLUNG2 Homo sapiens cDNA clone HLUNG2008348 5', mRNA (dbj|DA587359.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA774752 OCBBF2 Homo sapiens cDNA clone OCBBF2008526 5', mRNA (dbj|DA774752.1|), blast E-value=0, identity=94.68% | |
| 440-599, DA148303 BRAMY2 Homo sapiens cDNA clone BRAMY2005514 5', mRNA (dbj|DA148303.1|), blast E-value=0, identity=95.62% | |
| 440-599, DA410529 BRTHA3 Homo sapiens cDNA clone BRTHA3017335 5', mRNA (dbj|DA410529.1|), blast E-value=0, identity=95.62% | |
| 440-599, DA724396 NT2RI3 Homo sapiens cDNA clone NT2RI3005775 5', mRNA (dbj|DA724396.1|), blast E-value=0, identity=95.62% | |
| 440-599, DA780617 OCBBF2 Homo sapiens cDNA clone OCBBF2015906 5', mRNA (dbj|DA780617.1|), blast E-value=0, identity=95.62% | |
| 440-599, DB219248 TRACH3 Homo sapiens cDNA clone TRACH3009234 5', mRNA (dbj|DB219248.1|), blast E-value=0, identity=95.62% | |
| 440-599, DB285540 UTERU3 Homo sapiens cDNA clone UTERU3013824 5', mRNA (dbj|DB285540.1|), blast E-value=0, identity=95.62% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 52-239, DA093588 BRACE3 Homo sapiens cDNA clone BRACE3002491 5', mRNA (dbj|DA093588.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA148303 BRAMY2 Homo sapiens cDNA clone BRAMY2005514 5', mRNA (dbj|DA148303.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA229521 BRAWH3 Homo sapiens cDNA clone BRAWH3024183 5', mRNA (dbj|DA229521.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA415450 BRTHA3 Homo sapiens cDNA clone BRTHA3024238 5', mRNA (dbj|DA415450.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA587359 HLUNG2 Homo sapiens cDNA clone HLUNG2008348 5', mRNA (dbj|DA587359.1|), blast E-value=0, identity=94.68% | |
| 52-239, DA774752 OCBBF2 Homo sapiens cDNA clone OCBBF2008526 5', mRNA (dbj|DA774752.1|), blast E-value=0, identity=94.68% | |
| 440-599, DA148303 BRAMY2 Homo sapiens cDNA clone BRAMY2005514 5', mRNA (dbj|DA148303.1|), blast E-value=0, identity=95.62% | |
| 440-599, DA410529 BRTHA3 Homo sapiens cDNA clone BRTHA3017335 5', mRNA (dbj|DA410529.1|), blast E-value=0, identity=95.62% | |
| 440-599, DA724396 NT2RI3 Homo sapiens cDNA clone NT2RI3005775 5', mRNA (dbj|DA724396.1|), blast E-value=0, identity=95.62% | |
| 440-599, DA780617 OCBBF2 Homo sapiens cDNA clone OCBBF2015906 5', mRNA (dbj|DA780617.1|), blast E-value=0, identity=95.62% | |
| 440-599, DB219248 TRACH3 Homo sapiens cDNA clone TRACH3009234 5', mRNA (dbj|DB219248.1|), blast E-value=0, identity=95.62% | |
| 440-599, DB285540 UTERU3 Homo sapiens cDNA clone UTERU3013824 5', mRNA (dbj|DB285540.1|), blast E-value=0, identity=95.62% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-717, gnl|bosTau2|chr12 (5441467-5442181) | |
| 1-717, gnl|Hg17|chr13 (44048158-44047441) | |
| 1-717, gnl|Mm7|chr14 (71096485-71097202) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-717, gnl|bosTau2|chr12 (5441467-5442181) | |
| 1-717, gnl|Hg17|chr13 (44048158-44047441) | |
| 1-717, gnl|Mm7|chr14 (71096485-71097202) |