Non-Coding RNA Search

Ss1.1-Mixc-0028g02.3

Sequence:


               
               CTTCATAGACGTCACCCTTCAGACCAGGACTTTGCTAGATGATGAAAATGACAGCCTGAG
GTACTCAGCCTTTGTCTTGTTTGGGCAACTGGCGGCCTTTGCTGGGAGGAAGTGGAAGAG
ATTTTTCACCCGTCAGGTGCAGCAGACTCAAGATTCCCTCCTGACCCACTTACAGGATCG
GAATCCGCAGGTTGCCAAGGCTTGCAAAACAACTTTTCAAGCCTGTTCTCCGTTTCTGAG
ACCAAGGAAGGAATACAGCTTCTGGAGCGAAGAGGATCAAGTGAACCCTAAACTCTGCTG
GCAGCTGATCCACTGTCATCCAGAGCTCCTGCAGTTCTTCTATGCAAATAAAATTCTCTA
AACACAGGGTTGCTGGGAGATGGCTCTGTGTGCGCCCATTTGGGGAGGGGGACTGATACC
CCCCTCTTTTAACTCTTCAGATGCTTCCGTTTGCCTCTTGTGATTGTGATGGAAAAGGGT
TGTTGGGAGAGCAATTGATAGCAAAGATAACCCTGTGGAGTTAATATAATCTTATCCAAA
GTAAATTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCATAGACGTCACCCTTCAGACCAGGACTTTGCTAGATGATGAAAATGACAGCCTGAG
GTACTCAGCCTTTGTCTTGTTTGGGCAACTGGCGGCCTTTGCTGGGAGGAAGTGGAAGAG
ATTTTTCACCCGTCAGGTGCAGCAGACTCAAGATTCCCTCCTGACCCACTTACAGGATCG
GAATCCGCAGGTTGCCAAGGCTTGCAAAACAACTTTTCAAGCCTGTTCTCCGTTTCTGAG
ACCAAGGAAGGAATACAGCTTCTGGAGCGAAGAGGATCAAGTGAACCCTAAACTCTGCTG
GCAGCTGATCCACTGTCATCCAGAGCTCCTGCAGTTCTTCTATGCAAATAAAATTCTCTA
AACACAGGGTTGCTGGGAGATGGCTCTGTGTGCGCCCATTTGGGGAGGGGGACTGATACC
CCCCTCTTTTAACTCTTCAGATGCTTCCGTTTGCCTCTTGTGATTGTGATGGAAAAGGGT
TGTTGGGAGAGCAATTGATAGCAAAGATAACCCTGTGGAGTTAATATAATCTTATCCAAA
GTAAATTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26382706|dbj|BAB30579.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26382706|dbj|BAB30579.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-200, + strand, RNAz p=0.734647

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-200, + strand, RNAz p=0.734647

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               44-200, gnl|bosTau2|chr24 (39761551-39761395)
               

               
               44-200, gnl|canFam2|chr1 (27118966-27118803)
               

               
               44-200, gnl|dasNov1|scaffold_152740 (310-141)
               

               
               44-200, gnl|echTel1|scaffold_239030 (8806-8643)
               

               
               44-200, gnl|hg17|chr18 (46581717-46581880)
               

               
               44-200, gnl|Hg17|chr18 (46581872-46581716)
               

               
               44-200, gnl|loxAfr1|scaffold_3168 (49875-49712)
               

               
               44-200, gnl|mm7|chr18 (74271176-74271013)
               

               
               44-200, gnl|Mm7|chr18 (74271019-74271175)
               

               
               44-200, gnl|monDom2|scaffold_58 (11251178-11251340)
               

               
               44-200, gnl|oryCun1|scaffold_198320 (11932-12095)
               

               
               44-200, gnl|panTro1|chr17 (43182129-43182292)
               

               
               44-200, gnl|rheMac2|chr18 (43899694-43899857)
               

               
               44-200, gnl|rn3|chr18 (70732349-70732186)
               


               
               307-552, gnl|bosTau2|chr24 (39758884-39758646)
               

               
               307-552, gnl|Hg17|chr18 (46579759-46579511)
               

               
               307-552, gnl|Mm7|chr18 (74272180-74272415)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-200, gnl|bosTau2|chr24 (39761551-39761395)
               

               
               44-200, gnl|canFam2|chr1 (27118966-27118803)
               

               
               44-200, gnl|dasNov1|scaffold_152740 (310-141)
               

               
               44-200, gnl|echTel1|scaffold_239030 (8806-8643)
               

               
               44-200, gnl|hg17|chr18 (46581717-46581880)
               

               
               44-200, gnl|Hg17|chr18 (46581872-46581716)
               

               
               44-200, gnl|loxAfr1|scaffold_3168 (49875-49712)
               

               
               44-200, gnl|mm7|chr18 (74271176-74271013)
               

               
               44-200, gnl|Mm7|chr18 (74271019-74271175)
               

               
               44-200, gnl|monDom2|scaffold_58 (11251178-11251340)
               

               
               44-200, gnl|oryCun1|scaffold_198320 (11932-12095)
               

               
               44-200, gnl|panTro1|chr17 (43182129-43182292)
               

               
               44-200, gnl|rheMac2|chr18 (43899694-43899857)
               

               
               44-200, gnl|rn3|chr18 (70732349-70732186)
               


               
               307-552, gnl|bosTau2|chr24 (39758884-39758646)
               

               
               307-552, gnl|Hg17|chr18 (46579759-46579511)
               

               
               307-552, gnl|Mm7|chr18 (74272180-74272415)

	44-200, gnl\|bosTau2\|chr24 (39761551-39761395)
	44-200, gnl\|canFam2\|chr1 (27118966-27118803)
	44-200, gnl\|dasNov1\|scaffold_152740 (310-141)
	44-200, gnl\|echTel1\|scaffold_239030 (8806-8643)
	44-200, gnl\|hg17\|chr18 (46581717-46581880)
	44-200, gnl\|Hg17\|chr18 (46581872-46581716)
	44-200, gnl\|loxAfr1\|scaffold_3168 (49875-49712)
	44-200, gnl\|mm7\|chr18 (74271176-74271013)
	44-200, gnl\|Mm7\|chr18 (74271019-74271175)
	44-200, gnl\|monDom2\|scaffold_58 (11251178-11251340)
	44-200, gnl\|oryCun1\|scaffold_198320 (11932-12095)
	44-200, gnl\|panTro1\|chr17 (43182129-43182292)
	44-200, gnl\|rheMac2\|chr18 (43899694-43899857)
	44-200, gnl\|rn3\|chr18 (70732349-70732186)

	307-552, gnl\|bosTau2\|chr24 (39758884-39758646)
	307-552, gnl\|Hg17\|chr18 (46579759-46579511)
	307-552, gnl\|Mm7\|chr18 (74272180-74272415)