Non-Coding RNA Search

Ss1.1-Mixc-0028h24.3

Sequence:


               
               TCCAGAAGAGCCACTGGAGGGAGCACATGTACATACACACCGGGAAGCCTTTCAAATGCA
GCACTTGTGACAAGAGCTTCTGCAGGGCCAACCAGGCGGCCCGGCACGTGTGCCTCAACC
AGAGCATAGACACGTACACCATGGTGGACAAGCAGACTCTGGAGCTGTGCACCTTCGAGG
AAGGGAGCCAGATGGACAACCTGTTGGTGCAGACGAACAAACCCTACAAATGCAACCTGT
GTGACAAAACGTTCTCGACTCCCAATGAGGTGGTGAAACATTCGTGCCAAAACCAGAACT
CGGACGTCTTCGCCCTGGACGAGGGGCGGTCCATTCTCCTGGGCAGTGGGGACTCGGAAG
TGACGGAACCCGACCACCCGGTGTTAGCTTCCATCAAAAAGGAACAGGAAACCGTGTTGT
TAGACTGAATGTTCCTTATCTTTTTAAAAAACCTTGTCATTTTTACACAGACTATCTTCC
TTCCCTTCCCCCAATCCAGAACTGTAGCTCTCCACGTGGCATGAGCCGAACGCGTCCCTG
GCCCCTCCCTCCCTCCCTCCCTCCCCCGCGCCGTCCCCAGCCCCCTCCTCCCGAAAGGCT
TTGTGCATCATAAACCTGGAACATATTCACTTTAATTCAGGGGATATTGGAAAGATAATG
GTCAGTAGTACTTATAAACTCAGATTTTGAGAGGTTTTCGATTATTTAAAAGCATCCTTG
GAACTAATGAAGGGTATTTAACCAAACAAAACCACGCGAATGCAATTTGGTAACCAAGCT
AAAATTATGACTTTCCCTGGGTAATAAGTCTTCCTTCTCAGAAAGATAGTGTCTGGAAAC
ACAGCATGCTTCTTAGAAATACAGCGGGGCTCGGGACTATGCACAATCTCCAGGTGTGGG
GAAACTTGAAACCCAAGAACATGTTCTTAGTATTTATCCTCCAGGTATCTTATTTCAGAA
TGCATCCTTTGAGATTATGTCCAGTCAAGAAAAATCATTAGTTAAGAAATCTACTTGAAC
AAAACACAGAAGAGGAAAAAGTAATAATTGTGATGGCAATCTGAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGAAGAGCCACTGGAGGGAGCACATGTACATACACACCGGGAAGCCTTTCAAATGCA
GCACTTGTGACAAGAGCTTCTGCAGGGCCAACCAGGCGGCCCGGCACGTGTGCCTCAACC
AGAGCATAGACACGTACACCATGGTGGACAAGCAGACTCTGGAGCTGTGCACCTTCGAGG
AAGGGAGCCAGATGGACAACCTGTTGGTGCAGACGAACAAACCCTACAAATGCAACCTGT
GTGACAAAACGTTCTCGACTCCCAATGAGGTGGTGAAACATTCGTGCCAAAACCAGAACT
CGGACGTCTTCGCCCTGGACGAGGGGCGGTCCATTCTCCTGGGCAGTGGGGACTCGGAAG
TGACGGAACCCGACCACCCGGTGTTAGCTTCCATCAAAAAGGAACAGGAAACCGTGTTGT
TAGACTGAATGTTCCTTATCTTTTTAAAAAACCTTGTCATTTTTACACAGACTATCTTCC
TTCCCTTCCCCCAATCCAGAACTGTAGCTCTCCACGTGGCATGAGCCGAACGCGTCCCTG
GCCCCTCCCTCCCTCCCTCCCTCCCCCGCGCCGTCCCCAGCCCCCTCCTCCCGAAAGGCT
TTGTGCATCATAAACCTGGAACATATTCACTTTAATTCAGGGGATATTGGAAAGATAATG
GTCAGTAGTACTTATAAACTCAGATTTTGAGAGGTTTTCGATTATTTAAAAGCATCCTTG
GAACTAATGAAGGGTATTTAACCAAACAAAACCACGCGAATGCAATTTGGTAACCAAGCT
AAAATTATGACTTTCCCTGGGTAATAAGTCTTCCTTCTCAGAAAGATAGTGTCTGGAAAC
ACAGCATGCTTCTTAGAAATACAGCGGGGCTCGGGACTATGCACAATCTCCAGGTGTGGG
GAAACTTGAAACCCAAGAACATGTTCTTAGTATTTATCCTCCAGGTATCTTATTTCAGAA
TGCATCCTTTGAGATTATGTCCAGTCAAGAAAAATCATTAGTTAAGAAATCTACTTGAAC
AAAACACAGAAGAGGAAAAAGTAATAATTGTGATGGCAATCTGAATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.533233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.533233

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1068, gnl|bosTau2|chr9 (52922299-52923349)
               

               
               1-1068, gnl|Hg17|chr6 (151779197-151778155)
               

               
               1-1068, gnl|Mm7|chr10 (5978270-5979281)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1068, gnl|bosTau2|chr9 (52922299-52923349)
               

               
               1-1068, gnl|Hg17|chr6 (151779197-151778155)
               

               
               1-1068, gnl|Mm7|chr10 (5978270-5979281)

	1-1068, gnl\|bosTau2\|chr9 (52922299-52923349)
	1-1068, gnl\|Hg17\|chr6 (151779197-151778155)
	1-1068, gnl\|Mm7\|chr10 (5978270-5979281)