Ss1.1-Mixc-0028i20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGATGAAGAACGACCCTCTGGACTGGAACGGTGACCACATCCACACCAACTTCAGGGAC ATGTACCAGCACCTGAGGAGCATGGGCTACTTCGTCGAAGTCCTTGGGTCCCCCTTCACG TGTTTTGATGCTAATCAGTACGGAACGCTGCTCATGGTGGACAGTGAGGAGGAGTACTTC CCGGAAGAGGTGGCCAAGCTGCGGAGGGACGTGGACAACGGCCTCTCACTCATTGTCTTC AGTGACTGGTACAACACATCCGTGATGAGGAAAGTCAAGTTTTATGATGAAAACACGAGG CAGTGGTGGATGCCGGACACTGGAGGAGCCAACATCCCAGCCCTGAACGAGCTGCTCTCA GTCTGGAACATGGGGTTCAGCGATGGCCTGTACGAGGGGGACTTCACCTTGGCAAACCAT GACATGTACTACGCGTCGGGCTGCAGCATTGCTAAGTTTCCAGAAGATGGCATAGTGATC ACACAGACCTTTAAAGACCAAGGATTGGAGGTTTTAAAGCAGGAAACGGCGGTGGTTGAA AATGTCCCCATTTTGGGGCTGTATCAGATTCCAGCTGAGGGCGGGGGCCGGATCGTGCTG TATGGAGGCTCCCAGGCTAGGGGTTGCATCGGAGCCACAGATGGCGGCCTACACCACAGC CACGAGGGACCCAAGCCGCGTCTGTGACCTACACCCCAGCTCACAGCAATGCCGGATCTT CAACCCCCTGCACGAGGCCAGGGATCGAACCCGCATCCTCGTGGATGCGAGTCAGATTCG ------------------------TCCCCTTTGTAATTTTGTGACCACAGTTTGAGTGTA TGTAATTCACACATGGTAGCATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGATGAAGAACGACCCTCTGGACTGGAACGGTGACCACATCCACACCAACTTCAGGGAC ATGTACCAGCACCTGAGGAGCATGGGCTACTTCGTCGAAGTCCTTGGGTCCCCCTTCACG TGTTTTGATGCTAATCAGTACGGAACGCTGCTCATGGTGGACAGTGAGGAGGAGTACTTC CCGGAAGAGGTGGCCAAGCTGCGGAGGGACGTGGACAACGGCCTCTCACTCATTGTCTTC AGTGACTGGTACAACACATCCGTGATGAGGAAAGTCAAGTTTTATGATGAAAACACGAGG CAGTGGTGGATGCCGGACACTGGAGGAGCCAACATCCCAGCCCTGAACGAGCTGCTCTCA GTCTGGAACATGGGGTTCAGCGATGGCCTGTACGAGGGGGACTTCACCTTGGCAAACCAT GACATGTACTACGCGTCGGGCTGCAGCATTGCTAAGTTTCCAGAAGATGGCATAGTGATC ACACAGACCTTTAAAGACCAAGGATTGGAGGTTTTAAAGCAGGAAACGGCGGTGGTTGAA AATGTCCCCATTTTGGGGCTGTATCAGATTCCAGCTGAGGGCGGGGGCCGGATCGTGCTG TATGGAGGCTCCCAGGCTAGGGGTTGCATCGGAGCCACAGATGGCGGCCTACACCACAGC CACGAGGGACCCAAGCCGCGTCTGTGACCTACACCCCAGCTCACAGCAATGCCGGATCTT CAACCCCCTGCACGAGGCCAGGGATCGAACCCGCATCCTCGTGGATGCGAGTCAGATTCG ------------------------TCCCCTTTGTAATTTTGTGACCACAGTTTGAGTGTA TGTAATTCACACATGGTAGCATTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 501-612, + strand, RNAz p=0.871645 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 501-612, + strand, RNAz p=0.871645 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 142-300, gnl|bosTau2|chr18 (10789077-10789235) | |
| 142-300, gnl|canFam2|chr5 (71268708-71268549) | |
| 142-300, gnl|danRer3|chr18 (21071326-21071167) | |
| 142-300, gnl|dasNov1|scaffold_133193 (1946-1789) | |
| 142-300, gnl|echTel1|scaffold_30267 (4268-4109) | |
| 142-300, gnl|fr1|chrUn (168717496-168717655) | |
| 142-300, gnl|galGal2|chr11 (2407699-2407540) | |
| 142-300, gnl|hg17|chr16 (82658773-82658932) | |
| 142-300, gnl|Hg17|chr16 (82658930-82658772) | |
| 142-300, gnl|loxAfr1|scaffold_274 (58791-58950) | |
| 142-300, gnl|mm7|chr8 (118142897-118143056) | |
| 142-300, gnl|Mm7|chr8 (118143054-118142896) | |
| 142-300, gnl|monDom2|scaffold_23 (16625160-16625001) | |
| 142-300, gnl|oryCun1|scaffold_110700 (16484-16643) | |
| 142-300, gnl|panTro1|chr18 (77546459-77546618) | |
| 142-300, gnl|rheMac2|chr20 (82197993-82198152) | |
| 142-300, gnl|rn3|chr19 (49769958-49770117) | |
| 142-300, gnl|tetNig1|chrUn_random (18309906-18310065) | |
| 142-300, gnl|xenTro1|scaffold_696 (553876-553717) | |
| 501-612, gnl|bosTau2|chr18 (10793412-10793523) | |
| 501-612, gnl|canFam2|chr5 (71273032-71272858) | |
| 501-612, gnl|danRer3|chr18 (21076675-21076499) | |
| 501-612, gnl|dasNov1|scaffold_3533 (3594-3766) | |
| 501-612, gnl|echTel1|scaffold_259200 (6760-6908) | |
| 501-612, gnl|fr1|chrUn (168716532-168716702) | |
| 501-612, gnl|galGal2|chr11 (2412888-2412722) | |
| 501-612, gnl|hg17|chr16 (82654407-82654582) | |
| 501-612, gnl|Hg17|chr16 (82654553-82654442) | |
| 501-612, gnl|loxAfr1|scaffold_274 (54770-54944) | |
| 501-612, gnl|mm7|chr8 (118139277-118139448) | |
| 501-612, gnl|Mm7|chr8 (118139423-118139312) | |
| 501-612, gnl|monDom2|scaffold_23 (16631322-16631153) | |
| 501-612, gnl|oryCun1|scaffold_110700 (13167-13339) | |
| 501-612, gnl|panTro1|chr18 (77542087-77542262) | |
| 501-612, gnl|rheMac2|chr20 (82192882-82193056) | |
| 501-612, gnl|rn3|chr19 (49766434-49766604) | |
| 501-612, gnl|tetNig1|chrUn_random (18306707-18306873) | |
| 501-612, gnl|xenTro1|scaffold_696 (558239-558066) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-300, gnl|bosTau2|chr18 (10789077-10789235) | |
| 142-300, gnl|canFam2|chr5 (71268708-71268549) | |
| 142-300, gnl|danRer3|chr18 (21071326-21071167) | |
| 142-300, gnl|dasNov1|scaffold_133193 (1946-1789) | |
| 142-300, gnl|echTel1|scaffold_30267 (4268-4109) | |
| 142-300, gnl|fr1|chrUn (168717496-168717655) | |
| 142-300, gnl|galGal2|chr11 (2407699-2407540) | |
| 142-300, gnl|hg17|chr16 (82658773-82658932) | |
| 142-300, gnl|Hg17|chr16 (82658930-82658772) | |
| 142-300, gnl|loxAfr1|scaffold_274 (58791-58950) | |
| 142-300, gnl|mm7|chr8 (118142897-118143056) | |
| 142-300, gnl|Mm7|chr8 (118143054-118142896) | |
| 142-300, gnl|monDom2|scaffold_23 (16625160-16625001) | |
| 142-300, gnl|oryCun1|scaffold_110700 (16484-16643) | |
| 142-300, gnl|panTro1|chr18 (77546459-77546618) | |
| 142-300, gnl|rheMac2|chr20 (82197993-82198152) | |
| 142-300, gnl|rn3|chr19 (49769958-49770117) | |
| 142-300, gnl|tetNig1|chrUn_random (18309906-18310065) | |
| 142-300, gnl|xenTro1|scaffold_696 (553876-553717) | |
| 501-612, gnl|bosTau2|chr18 (10793412-10793523) | |
| 501-612, gnl|canFam2|chr5 (71273032-71272858) | |
| 501-612, gnl|danRer3|chr18 (21076675-21076499) | |
| 501-612, gnl|dasNov1|scaffold_3533 (3594-3766) | |
| 501-612, gnl|echTel1|scaffold_259200 (6760-6908) | |
| 501-612, gnl|fr1|chrUn (168716532-168716702) | |
| 501-612, gnl|galGal2|chr11 (2412888-2412722) | |
| 501-612, gnl|hg17|chr16 (82654407-82654582) | |
| 501-612, gnl|Hg17|chr16 (82654553-82654442) | |
| 501-612, gnl|loxAfr1|scaffold_274 (54770-54944) | |
| 501-612, gnl|mm7|chr8 (118139277-118139448) | |
| 501-612, gnl|Mm7|chr8 (118139423-118139312) | |
| 501-612, gnl|monDom2|scaffold_23 (16631322-16631153) | |
| 501-612, gnl|oryCun1|scaffold_110700 (13167-13339) | |
| 501-612, gnl|panTro1|chr18 (77542087-77542262) | |
| 501-612, gnl|rheMac2|chr20 (82192882-82193056) | |
| 501-612, gnl|rn3|chr19 (49766434-49766604) | |
| 501-612, gnl|tetNig1|chrUn_random (18306707-18306873) | |
| 501-612, gnl|xenTro1|scaffold_696 (558239-558066) |