Non-Coding RNA Search

Ss1.1-Mixc-0028n10.3

Sequence:


               
               CACCCCAGCCNGGGTCCAGTGTTGGACACAGTGGGCTCTGCCTTTGATTTGGGCCTGGTG
GCACAGGCCCATGACCCCAAGGCCCAGCACCACCAGGGCCACCCACACTGAATTTGATTC
CTTCCAGCCCACCCTGGCATCAGCAGCTCTGTCATGTCAAGCCAGGGCCCCAGGATGGAC
AAAAGGTGCACGCTGGAGTATCTGACCTGGCTAGCCCCATCCTCGTGGGTACCAAGCCCG
GCTGCCATCCAGCTGCACCCACAGGGGTGGATGTGGACCCAAGGGCCCAGCACTGCAGGG
CCCACGTCCAAAACCCCTACATCCCAGCTCCGTGTTCACACAGCTCCCAAGCCGGGACCT
GCCCGCTACTGCCGGGCACACCCGCATGCACACGCACACACAGGCGCCCCACCCTACCCC
ACACGCCTATCTACCTACCTAAGGAGAAGGCCGGAGCGCCGTGGGCCGGCCAGGGTCTCC
CGCCTCTCCCCACACCCCGCCGCCGTGGAAAGCCATGGGCCCCCTCCCGCCCCCATAACT
AAGCAGCACAATAACCGACTTAGCGAATTCAGGTAGAAGGAACGTTTAGGTAGCACCTAT
TTTGTACTGATTCTACAAGTAGGGCCCGAGATGCGGGGGCCCTCGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCAGCCNGGGTCCAGTGTTGGACACAGTGGGCTCTGCCTTTGATTTGGGCCTGGTG
GCACAGGCCCATGACCCCAAGGCCCAGCACCACCAGGGCCACCCACACTGAATTTGATTC
CTTCCAGCCCACCCTGGCATCAGCAGCTCTGTCATGTCAAGCCAGGGCCCCAGGATGGAC
AAAAGGTGCACGCTGGAGTATCTGACCTGGCTAGCCCCATCCTCGTGGGTACCAAGCCCG
GCTGCCATCCAGCTGCACCCACAGGGGTGGATGTGGACCCAAGGGCCCAGCACTGCAGGG
CCCACGTCCAAAACCCCTACATCCCAGCTCCGTGTTCACACAGCTCCCAAGCCGGGACCT
GCCCGCTACTGCCGGGCACACCCGCATGCACACGCACACACAGGCGCCCCACCCTACCCC
ACACGCCTATCTACCTACCTAAGGAGAAGGCCGGAGCGCCGTGGGCCGGCCAGGGTCTCC
CGCCTCTCCCCACACCCCGCCGCCGTGGAAAGCCATGGGCCCCCTCCCGCCCCCATAACT
AAGCAGCACAATAACCGACTTAGCGAATTCAGGTAGAAGGAACGTTTAGGTAGCACCTAT
TTTGTACTGATTCTACAAGTAGGGCCCGAGATGCGGGGGCCCTCGGGT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               1-155, - strand, RNAz p=0.999497
               

               
               232-540, - strand, RNAz p=0.963892
               

               
               268-425, - strand, RNAz p=0.996505
               

               
               531-648, + strand, RNAz p=0.632044

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-155, - strand, RNAz p=0.999497
               

               
               232-540, - strand, RNAz p=0.963892
               

               
               268-425, - strand, RNAz p=0.996505
               

               
               531-648, + strand, RNAz p=0.632044

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               359-457, - strand, RNAmicro p=0.999273

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               359-457, - strand, RNAmicro p=0.999273

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               1-648, gnl|bosTau2|chr14 (2252-2892)
               

               
               1-648, gnl|canFam2|chr13 (40789702-40790090)
               

               
               1-648, gnl|echTel1|scaffold_163108 (535-222)
               

               
               1-648, gnl|hg17|chr8 (145525276-145525660)
               

               
               1-648, gnl|Hg17|chr8 (145525898-145525277)
               

               
               1-648, gnl|mm7|chr15 (76599004-76599385)
               

               
               1-648, gnl|Mm7|chr15 (76599626-76599005)
               

               
               1-648, gnl|monDom2|scaffold_79 (2949481-2949965)
               

               
               1-648, gnl|panTro1|chr7 (148774496-148774880)
               

               
               1-648, gnl|rn3|chr7 (114601473-114601854)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr14 (2252-2892)
               

               
               1-648, gnl|canFam2|chr13 (40789702-40790090)
               

               
               1-648, gnl|echTel1|scaffold_163108 (535-222)
               

               
               1-648, gnl|hg17|chr8 (145525276-145525660)
               

               
               1-648, gnl|Hg17|chr8 (145525898-145525277)
               

               
               1-648, gnl|mm7|chr15 (76599004-76599385)
               

               
               1-648, gnl|Mm7|chr15 (76599626-76599005)
               

               
               1-648, gnl|monDom2|scaffold_79 (2949481-2949965)
               

               
               1-648, gnl|panTro1|chr7 (148774496-148774880)
               

               
               1-648, gnl|rn3|chr7 (114601473-114601854)

	1-155, - strand, RNAz p=0.999497
	232-540, - strand, RNAz p=0.963892
	268-425, - strand, RNAz p=0.996505
	531-648, + strand, RNAz p=0.632044

	1-648, gnl\|bosTau2\|chr14 (2252-2892)
	1-648, gnl\|canFam2\|chr13 (40789702-40790090)
	1-648, gnl\|echTel1\|scaffold_163108 (535-222)
	1-648, gnl\|hg17\|chr8 (145525276-145525660)
	1-648, gnl\|Hg17\|chr8 (145525898-145525277)
	1-648, gnl\|mm7\|chr15 (76599004-76599385)
	1-648, gnl\|Mm7\|chr15 (76599626-76599005)
	1-648, gnl\|monDom2\|scaffold_79 (2949481-2949965)
	1-648, gnl\|panTro1\|chr7 (148774496-148774880)
	1-648, gnl\|rn3\|chr7 (114601473-114601854)