Non-Coding RNA Search

Ss1.1-Mixc-0029,i06.3

Sequence:


               
               GAGCACCAGAACTGCCATGTGCAGGTGGTGGAAAGGTGATGGCTTGGGGGCTGGGAGAGC
AGGACCTGTTTACACTCAGGGGGTTGATGGTGGCTCAAGTCCTCAGCTTCTCCCACTTTT
TCTGACCCCTCTCTTTTCTTCCTCTCTTTGCTTCTCTTGTGTTTCCCGAAGGGAGTGGGA
GAACTTGTAAGTGCCTCAGAATTTAAAAATTCTCTTTCCTAGGTCCGCCAGGGTCCCTAC
TCTCCTCACTCTATCACGAACTCTACATTCGTGCCCCTGACCTCGGGTCTCTGAATAGCT
CAGCTTGGAGAGGTCTGGGGTTGGGGGTCCCTGGTTTGCAAGGACCAGGTCCCAGCAGCC
CAGTGGTCCGGGGGCCGGGAGGGCGACTGGTTCCATCTCTCCCCTCCCCCAGCTTCAGGC
GCCCTCCTCGCTCCCTCCCTTCCGCAGGAACCAGTCCAACGTGCGGCGCATGCACACGGC
AGTGAGGCTGAACGAGGTCATCGTCAAGAAATCCCGGGATGCCAAGCTTGTTTTGCTCAA
CATGCCCGGGCCTCCCCGCAACCGCAACGGTGACGAAAATTACATGGAGTTCCTCGAGGT
CCTCACCGAGCACCTGGACCGAGTGATGCTGGTCCGCGGCGGGGGCCGCGAGGTCATCAC
CATCTACTCCTGAGAGCCAGGACCTGCCACCCGGGCCCGAGCGCGCCCGGCCCACGGCCC
CGGAGCCCTCGCCGCGCCCCCCGCCGCTCTCACCGTTTACATAAAGACCCTGTGCCCGCG
CCCTGGCCCCTTTCCCCGCTGCCTGAAGCCCGGAGGACACGTCCATCGGGGCTGACTCGG
AGAGGACCACCCGGCGCGGAGACCGGAGACCAGAGCCCCGAGCTCCCGGTGGCACGTCGC
CCTGTCGCTGCCCTTTTTCAAAGCCTGGCCTCGCCTCGCCGGAGGAGACGCTGCAATAAA
GGTCGGAGGAGGCGCGGAGAGGAGCAGAGCTGGGGCCTTGTGGACCCCGGGTTGTCCGCG
CGGCCCCTCCCCACGCTTCCCGCGCCGCGCCCGTCCTCACTCTGCGTCCCTTCCGCGGCG
GCCGGGAGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCACCAGAACTGCCATGTGCAGGTGGTGGAAAGGTGATGGCTTGGGGGCTGGGAGAGC
AGGACCTGTTTACACTCAGGGGGTTGATGGTGGCTCAAGTCCTCAGCTTCTCCCACTTTT
TCTGACCCCTCTCTTTTCTTCCTCTCTTTGCTTCTCTTGTGTTTCCCGAAGGGAGTGGGA
GAACTTGTAAGTGCCTCAGAATTTAAAAATTCTCTTTCCTAGGTCCGCCAGGGTCCCTAC
TCTCCTCACTCTATCACGAACTCTACATTCGTGCCCCTGACCTCGGGTCTCTGAATAGCT
CAGCTTGGAGAGGTCTGGGGTTGGGGGTCCCTGGTTTGCAAGGACCAGGTCCCAGCAGCC
CAGTGGTCCGGGGGCCGGGAGGGCGACTGGTTCCATCTCTCCCCTCCCCCAGCTTCAGGC
GCCCTCCTCGCTCCCTCCCTTCCGCAGGAACCAGTCCAACGTGCGGCGCATGCACACGGC
AGTGAGGCTGAACGAGGTCATCGTCAAGAAATCCCGGGATGCCAAGCTTGTTTTGCTCAA
CATGCCCGGGCCTCCCCGCAACCGCAACGGTGACGAAAATTACATGGAGTTCCTCGAGGT
CCTCACCGAGCACCTGGACCGAGTGATGCTGGTCCGCGGCGGGGGCCGCGAGGTCATCAC
CATCTACTCCTGAGAGCCAGGACCTGCCACCCGGGCCCGAGCGCGCCCGGCCCACGGCCC
CGGAGCCCTCGCCGCGCCCCCCGCCGCTCTCACCGTTTACATAAAGACCCTGTGCCCGCG
CCCTGGCCCCTTTCCCCGCTGCCTGAAGCCCGGAGGACACGTCCATCGGGGCTGACTCGG
AGAGGACCACCCGGCGCGGAGACCGGAGACCAGAGCCCCGAGCTCCCGGTGGCACGTCGC
CCTGTCGCTGCCCTTTTTCAAAGCCTGGCCTCGCCTCGCCGGAGGAGACGCTGCAATAAA
GGTCGGAGGAGGCGCGGAGAGGAGCAGAGCTGGGGCCTTGTGGACCCCGGGTTGTCCGCG
CGGCCCCTCCCCACGCTTCCCGCGCCGCGCCCGTCCTCACTCTGCGTCCCTTCCGCGGCG
GCCGGGAGGGCG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               121-237, - strand, RNAz p=0.559876
               

               
               278-383, - strand, RNAz p=0.776118
               

               
               458-579, - strand, RNAz p=0.910277

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-237, - strand, RNAz p=0.559876
               

               
               278-383, - strand, RNAz p=0.776118
               

               
               458-579, - strand, RNAz p=0.910277

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-579, gnl|bosTau2|chr13 (54826093-54826673)
               

               
               7-579, gnl|Hg17|chr20 (44118785-44119347)
               

               
               7-579, gnl|Mm7|chr2 (164737362-164737895)
               


               
               582-1092, gnl|bosTau2|chr13 (54826885-54827382)
               

               
               582-1092, gnl|Hg17|chr20 (44119560-44120087)
               

               
               582-1092, gnl|Mm7|chr2 (164738034-164738468)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-579, gnl|bosTau2|chr13 (54826093-54826673)
               

               
               7-579, gnl|Hg17|chr20 (44118785-44119347)
               

               
               7-579, gnl|Mm7|chr2 (164737362-164737895)
               


               
               582-1092, gnl|bosTau2|chr13 (54826885-54827382)
               

               
               582-1092, gnl|Hg17|chr20 (44119560-44120087)
               

               
               582-1092, gnl|Mm7|chr2 (164738034-164738468)

	121-237, - strand, RNAz p=0.559876
	278-383, - strand, RNAz p=0.776118
	458-579, - strand, RNAz p=0.910277

	7-579, gnl\|bosTau2\|chr13 (54826093-54826673)
	7-579, gnl\|Hg17\|chr20 (44118785-44119347)
	7-579, gnl\|Mm7\|chr2 (164737362-164737895)

	582-1092, gnl\|bosTau2\|chr13 (54826885-54827382)
	582-1092, gnl\|Hg17\|chr20 (44119560-44120087)
	582-1092, gnl\|Mm7\|chr2 (164738034-164738468)