Non-Coding RNA Search

Ss1.1-Mixc-0029,m20.5

Sequence:


               
               GACAGATCCTTAATGGTGGCCAGAACTACCATGCAGTGCAAAAATAAATTAATTGTATTC
TTGAGATTAACAGTGCAAGGCCACTAAGTTTTATAAATCTGTCACTATCTGTTTTTTTAA
AATGGAGTATGTACGTGTAGTTCTGTTGAAAGATACACTGTGTATATGTGTGTAGATGCA
ATTATGTGAACTACAAGGTGTTCATAACATGTATTTCCCATCTCTAAAACCCATGTTGAA
ATGTAAGTACAGAAAGACAGAAGTAGGTGTTTTGCTTAAATTCTTATTGAATCTATTGTG
GCTCCATTTTCTTTACAATGTGCAGTCTTATGGATTTGTTAAGAGTCATTCAACAGTTTG
GTTTTCTTTGCAAACAGAAAAAAAATGAGCCCCCAGCCTTTCTCAAGAAGTGATGCTGGC
CTAAGGAAGAATGAATGGGCACTATCAGAACCAGCTGAGGGCTCCGTCTGTGCTGGGGTC
CTTTGGGTCCCCAAGGTCTAGCACTATTTTCTGTGTCCTAAAACCAGTACATTAAGCTCT
GCAGAGATTGCGCAAGAAATGGTAAGGTACATTCTTGGAATAAACCAGGTTACTTGCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGATCCTTAATGGTGGCCAGAACTACCATGCAGTGCAAAAATAAATTAATTGTATTC
TTGAGATTAACAGTGCAAGGCCACTAAGTTTTATAAATCTGTCACTATCTGTTTTTTTAA
AATGGAGTATGTACGTGTAGTTCTGTTGAAAGATACACTGTGTATATGTGTGTAGATGCA
ATTATGTGAACTACAAGGTGTTCATAACATGTATTTCCCATCTCTAAAACCCATGTTGAA
ATGTAAGTACAGAAAGACAGAAGTAGGTGTTTTGCTTAAATTCTTATTGAATCTATTGTG
GCTCCATTTTCTTTACAATGTGCAGTCTTATGGATTTGTTAAGAGTCATTCAACAGTTTG
GTTTTCTTTGCAAACAGAAAAAAAATGAGCCCCCAGCCTTTCTCAAGAAGTGATGCTGGC
CTAAGGAAGAATGAATGGGCACTATCAGAACCAGCTGAGGGCTCCGTCTGTGCTGGGGTC
CTTTGGGTCCCCAAGGTCTAGCACTATTTTCTGTGTCCTAAAACCAGTACATTAAGCTCT
GCAGAGATTGCGCAAGAAATGGTAAGGTACATTCTTGGAATAAACCAGGTTACTTGCGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-114, - strand, RNAz p=0.521508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.521508

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-596, gnl|bosTau2|chr18 (53710357-53709766)
               

               
               1-596, gnl|Hg17|chr9 (20332499-20331860)
               

               
               1-596, gnl|Mm7|chr4 (87173938-87173329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-596, gnl|bosTau2|chr18 (53710357-53709766)
               

               
               1-596, gnl|Hg17|chr9 (20332499-20331860)
               

               
               1-596, gnl|Mm7|chr4 (87173938-87173329)

	1-596, gnl\|bosTau2\|chr18 (53710357-53709766)
	1-596, gnl\|Hg17\|chr9 (20332499-20331860)
	1-596, gnl\|Mm7\|chr4 (87173938-87173329)