Non-Coding RNA Search

Ss1.1-Mixc-0029f17.3

Sequence:


               
               CGTTAAAGAACCGGGAAGCTCAGGAGCCAGGGGCTGCGGAGGCCCTTCCAGATTCTATAA
CCTCCCCGGGGCCTCCCTGTGCCTCCACCCAGAGGGGGATGCACCCCGCAAATCTCCCTT
ATCAGCGGGATCACCTGGCTCCACCACCCAGGCCCACTGATTAATCTTTTTAAATCAACC
CCGGGAGGCTGACAGCCTGGATTCCGAGATAGAGCTGATCAGATGCTGGGAAAGGCCGGT
GGCCTGCTATTGTCACTGGCCAGTGCAAAGTGCAGGGCCTCCCCGGCCTGATCCTGGGTT
CCCACCTCCCATTCAAATATCCTTCAAGGGCCAGCCCAGGGTGTGGGGGCAGGGAGAATA
AACATCCAAGTACAAAATCCTAATAGCTCTTTAACTGTGATGAGGAGGGCAGCAGCCCAG
GCCTCCCCACTCCAGGGCACCTGGGCAGGTCTACGGGGAGCTTGTCACTCACTTGTCCAT
CTCACACTGCAGCAAACAGGTAGGGCTCATACCTATGGATACTCAAAACTAAGGGAAAGG
TCCCTACAACCCTGTAACCCCAACCCCCGCTGACTCTCAATTTCACTTCCCCTTCTAACC
CTCTCGGCCTTTAGACTCGTGATGCAGAAAATGCATCTCCTCCCAGAGACTCAGGGCAGG
CGCGGGCACACACAGCCATCAATGCACGCTGGCACCGGGTCCCAATCCCACCACCCCCAG
CCACGGACCTTTCCAGCTGTGTGCTCTACCCACAGAGCTGCCTCCGCCTGGAAGAGCTGG
ATCCGGCCCCGAGCTCCCGCCCCCGCTGGAGTCCAGAGGTGATTCGGCCTCTCACTCTCT
CTGGCTGTGTGACCCCGGGCAAATAGCTCAGCCTCACCAGGCTTCCCAGTACAAAAATAA
ACAAATAAAGATGAAGCTGATAACCGCTGGCGAGACTTAGGGAGCTGATAGCCAAGAAGG
TGAAGCGCGTGGAAAAGAGAGAATTTAGCACCTGCACCCCGCGAGGAAGGGGGGAGGGGT
GCTGGGCAAAGGAATGTGTAATCCGGCCCCACCCCGAGCAGTGAATGGGGAGCAGCTCCC
CACCGCCAGGCTAATGGGATTAGCACAGGGCTCTGGCTCTGGGCGTTGGCCCGGGGTCCC
TAGGTCTCGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTAAAGAACCGGGAAGCTCAGGAGCCAGGGGCTGCGGAGGCCCTTCCAGATTCTATAA
CCTCCCCGGGGCCTCCCTGTGCCTCCACCCAGAGGGGGATGCACCCCGCAAATCTCCCTT
ATCAGCGGGATCACCTGGCTCCACCACCCAGGCCCACTGATTAATCTTTTTAAATCAACC
CCGGGAGGCTGACAGCCTGGATTCCGAGATAGAGCTGATCAGATGCTGGGAAAGGCCGGT
GGCCTGCTATTGTCACTGGCCAGTGCAAAGTGCAGGGCCTCCCCGGCCTGATCCTGGGTT
CCCACCTCCCATTCAAATATCCTTCAAGGGCCAGCCCAGGGTGTGGGGGCAGGGAGAATA
AACATCCAAGTACAAAATCCTAATAGCTCTTTAACTGTGATGAGGAGGGCAGCAGCCCAG
GCCTCCCCACTCCAGGGCACCTGGGCAGGTCTACGGGGAGCTTGTCACTCACTTGTCCAT
CTCACACTGCAGCAAACAGGTAGGGCTCATACCTATGGATACTCAAAACTAAGGGAAAGG
TCCCTACAACCCTGTAACCCCAACCCCCGCTGACTCTCAATTTCACTTCCCCTTCTAACC
CTCTCGGCCTTTAGACTCGTGATGCAGAAAATGCATCTCCTCCCAGAGACTCAGGGCAGG
CGCGGGCACACACAGCCATCAATGCACGCTGGCACCGGGTCCCAATCCCACCACCCCCAG
CCACGGACCTTTCCAGCTGTGTGCTCTACCCACAGAGCTGCCTCCGCCTGGAAGAGCTGG
ATCCGGCCCCGAGCTCCCGCCCCCGCTGGAGTCCAGAGGTGATTCGGCCTCTCACTCTCT
CTGGCTGTGTGACCCCGGGCAAATAGCTCAGCCTCACCAGGCTTCCCAGTACAAAAATAA
ACAAATAAAGATGAAGCTGATAACCGCTGGCGAGACTTAGGGAGCTGATAGCCAAGAAGG
TGAAGCGCGTGGAAAAGAGAGAATTTAGCACCTGCACCCCGCGAGGAAGGGGGGAGGGGT
GCTGGGCAAAGGAATGTGTAATCCGGCCCCACCCCGAGCAGTGAATGGGGAGCAGCTCCC
CACCGCCAGGCTAATGGGATTAGCACAGGGCTCTGGCTCTGGGCGTTGGCCCGGGGTCCC
TAGGTCTCGGCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               4-153, - strand, RNAz p=0.932268
               

               
               975-1148, - strand, RNAz p=0.984569

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-153, - strand, RNAz p=0.932268
               

               
               975-1148, - strand, RNAz p=0.984569

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               4-1148, gnl|bosTau2|chr25 (40722099-40723241)
               

               
               4-1148, gnl|Hg17|chr7 (5230573-5231776)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1148, gnl|bosTau2|chr25 (40722099-40723241)
               

               
               4-1148, gnl|Hg17|chr7 (5230573-5231776)

	4-153, - strand, RNAz p=0.932268
	975-1148, - strand, RNAz p=0.984569

	4-1148, gnl\|bosTau2\|chr25 (40722099-40723241)
	4-1148, gnl\|Hg17\|chr7 (5230573-5231776)