Non-Coding RNA Search

Ss1.1-Mixc-0029h19.5

Sequence:


               
               TTTATAAAAATTTTACAATGATTTTCCTATTTTGTTTAAAAGGATATGTATAGTGTATTA
AATGAGTGTTGAAGATAAAACCAAGTTATTTTAGTCTGCCATTAGCTCATATGTCTTTGG
GGCACATCTTTCCATGTTTTGAAATTTTAATATTTTTTGTCTTTATTAGTAGGGGTGAGT
GTTAAAGGCCAATAGGCTAACCTAGTATCTTGCTTACAGTCTTTCTGTCTACCTCAATTC
CTGTTGCTGTCTTGGATCGATCTGACACCTTGCAAGTATCTTTGACCTCTGGGCCATTGA
CTTCATTACATTCCAGGAACTTAACTCCCATGGCCACACCATGAATATCACCATCCTGAA
TTTATCTTTCTGAAATTTTAAATTTCAGTCACTAATGATATTCTCATCTTTTTAGCTTTT
TTAAATTCTTCATTTTTATTGATTTTTCTCTTATTTCTTTTCTATCTCTTTAGCTTCTTC
ATAGCCTCTTCCTCTTGACTCTTTTCTCCTCACCATTAGCTTCTTTCAGATTTTCTTCTT
TCCTTATCTACCTTCTGCCTTGGGGGGCACCATATTAAGTGCTCTCCAAAGTCCCTTAAT
TAATCCTACCATTCTACCTTCTTTTCTGGGATGCTTAGTTCTTTGTGAGGTTCCTGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATAAAAATTTTACAATGATTTTCCTATTTTGTTTAAAAGGATATGTATAGTGTATTA
AATGAGTGTTGAAGATAAAACCAAGTTATTTTAGTCTGCCATTAGCTCATATGTCTTTGG
GGCACATCTTTCCATGTTTTGAAATTTTAATATTTTTTGTCTTTATTAGTAGGGGTGAGT
GTTAAAGGCCAATAGGCTAACCTAGTATCTTGCTTACAGTCTTTCTGTCTACCTCAATTC
CTGTTGCTGTCTTGGATCGATCTGACACCTTGCAAGTATCTTTGACCTCTGGGCCATTGA
CTTCATTACATTCCAGGAACTTAACTCCCATGGCCACACCATGAATATCACCATCCTGAA
TTTATCTTTCTGAAATTTTAAATTTCAGTCACTAATGATATTCTCATCTTTTTAGCTTTT
TTAAATTCTTCATTTTTATTGATTTTTCTCTTATTTCTTTTCTATCTCTTTAGCTTCTTC
ATAGCCTCTTCCTCTTGACTCTTTTCTCCTCACCATTAGCTTCTTTCAGATTTTCTTCTT
TCCTTATCTACCTTCTGCCTTGGGGGGCACCATATTAAGTGCTCTCCAAAGTCCCTTAAT
TAATCCTACCATTCTACCTTCTTTTCTGGGATGCTTAGTTCTTTGTGAGGTTCCTGCCGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               307-423, - strand, RNAz p=0.955398
               

               
               488-597, - strand, RNAz p=0.557868

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-423, - strand, RNAz p=0.955398
               

               
               488-597, - strand, RNAz p=0.557868

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-597, gnl|bosTau2|chr20 (19471193-19470592)
               

               
               1-597, gnl|Hg17|chr5 (41953756-41954356)
               

               
               1-597, gnl|Mm7|chr15 (3813309-3812771)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-597, gnl|bosTau2|chr20 (19471193-19470592)
               

               
               1-597, gnl|Hg17|chr5 (41953756-41954356)
               

               
               1-597, gnl|Mm7|chr15 (3813309-3812771)

	307-423, - strand, RNAz p=0.955398
	488-597, - strand, RNAz p=0.557868

	1-597, gnl\|bosTau2\|chr20 (19471193-19470592)
	1-597, gnl\|Hg17\|chr5 (41953756-41954356)
	1-597, gnl\|Mm7\|chr15 (3813309-3812771)