Non-Coding RNA Search

Ss1.1-Mixc-0029k19.5

Sequence:


               
               GGGCGACGGGCGAGGGGCTGGTGGGCAGGGCGGGCCCGGGCCCGGGGCTGGGGCTGCAGC
CCGGCTGAGCGCTGAGCAACCCTTCGTCCCACTTCAAGGGCCACCAGGAGAAGATTCGGC
AGCGGCTGTCGGTCCTGCCTCCCCCCCAGGGCCCGGCCCCCATCCCCTTCCAGCGCCACG
GCGGGGACGCCCCTTCCACAAAGAACCGAGTGGGTCTGCCAGTGCCGCTCAGCGAGCCAG
GCATCCACCGCCGGGAGTCGCTGGAGGAGGAGCCCCGCGCCCTGCTGGCCCAGAAGATCG
AGAAGGAGACGCAAATCCTCAACTGCGCCCTGGATGACATAGAGTGGTTCGTGGCGCGGC
TGCAGAAGGCGGCTGAGGCGTTCAAGCAGCTGAACCAGCGCAAGAAGGGAAAGAAGAAGG
GGAAGAAGGGGCCGGCAGAGGGCGTGCTCACGCTGCGGGCACGGCCCCCCTCCGAGGCAG
AGTTTGTTGACTGCTTCCAGAAGATCAAGCTGGCCATCAACCTACTGGCCAAGCTGCAGA
AGCACATCCAGAACCCCAGCGCAGCGGAGCTGGTGCACTTCCTCTTCGGACCTCTGGACC
TGATTGTCAGCACGTGTGGCGGCCCGGACATTGCTCGCTCCGTCTCCAGTCCCCTGCTCT
CCCGAGACACTGTGGGCTTCCTGCGCGGCCACCTGGTCCCCAAGGAGATGGCGCTGTGGG
AGTCCCTAGGGGAAACCTGGACACGCCCCCGCTCCGAGTGGCCCCGGGAGCCGCAGGTGC
GGCCCTACGTGCCCAAGTTCCACAGCGGCTGGGAGCCGCCTCTGGATGTGCTGCAGGAAG
CCCCCTGGGAGGTGGAGGGGCTGGCGCCCGCCCCCGTTGACGAGCCAGCTCCAGGGGGCC
GACCATCCTTTCGCAACTCCCCGAAGCACGGCCCCATCTCTGAGCCCGCACCCCAGGGGG
ACGTCCTCCCCCCGGTCAGCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGACGGGCGAGGGGCTGGTGGGCAGGGCGGGCCCGGGCCCGGGGCTGGGGCTGCAGC
CCGGCTGAGCGCTGAGCAACCCTTCGTCCCACTTCAAGGGCCACCAGGAGAAGATTCGGC
AGCGGCTGTCGGTCCTGCCTCCCCCCCAGGGCCCGGCCCCCATCCCCTTCCAGCGCCACG
GCGGGGACGCCCCTTCCACAAAGAACCGAGTGGGTCTGCCAGTGCCGCTCAGCGAGCCAG
GCATCCACCGCCGGGAGTCGCTGGAGGAGGAGCCCCGCGCCCTGCTGGCCCAGAAGATCG
AGAAGGAGACGCAAATCCTCAACTGCGCCCTGGATGACATAGAGTGGTTCGTGGCGCGGC
TGCAGAAGGCGGCTGAGGCGTTCAAGCAGCTGAACCAGCGCAAGAAGGGAAAGAAGAAGG
GGAAGAAGGGGCCGGCAGAGGGCGTGCTCACGCTGCGGGCACGGCCCCCCTCCGAGGCAG
AGTTTGTTGACTGCTTCCAGAAGATCAAGCTGGCCATCAACCTACTGGCCAAGCTGCAGA
AGCACATCCAGAACCCCAGCGCAGCGGAGCTGGTGCACTTCCTCTTCGGACCTCTGGACC
TGATTGTCAGCACGTGTGGCGGCCCGGACATTGCTCGCTCCGTCTCCAGTCCCCTGCTCT
CCCGAGACACTGTGGGCTTCCTGCGCGGCCACCTGGTCCCCAAGGAGATGGCGCTGTGGG
AGTCCCTAGGGGAAACCTGGACACGCCCCCGCTCCGAGTGGCCCCGGGAGCCGCAGGTGC
GGCCCTACGTGCCCAAGTTCCACAGCGGCTGGGAGCCGCCTCTGGATGTGCTGCAGGAAG
CCCCCTGGGAGGTGGAGGGGCTGGCGCCCGCCCCCGTTGACGAGCCAGCTCCAGGGGGCC
GACCATCCTTTCGCAACTCCCCGAAGCACGGCCCCATCTCTGAGCCCGCACCCCAGGGGG
ACGTCCTCCCCCCGGTCAGCTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-429, + strand, RNAz p=0.961715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-429, + strand, RNAz p=0.961715

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC080636, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC080636, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               13-270, gnl|bosTau2|chr29 (44750442-44750687)
               

               
               13-270, gnl|Hg17|chr11 (710912-711229)
               

               
               13-270, gnl|Mm7|chr7 (137773215-137773529)
               


               
               311-464, gnl|bosTau2|chr29 (44750962-44751112)
               

               
               311-464, gnl|Hg17|chr11 (711564-711754)
               

               
               311-464, gnl|Mm7|chr7 (137773799-137773966)
               


               
               599-786, gnl|bosTau2|chr29 (44751867-44752057)
               

               
               599-786, gnl|Hg17|chr11 (712397-712621)
               

               
               599-786, gnl|Mm7|chr7 (137774802-137774994)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-270, gnl|bosTau2|chr29 (44750442-44750687)
               

               
               13-270, gnl|Hg17|chr11 (710912-711229)
               

               
               13-270, gnl|Mm7|chr7 (137773215-137773529)
               


               
               311-464, gnl|bosTau2|chr29 (44750962-44751112)
               

               
               311-464, gnl|Hg17|chr11 (711564-711754)
               

               
               311-464, gnl|Mm7|chr7 (137773799-137773966)
               


               
               599-786, gnl|bosTau2|chr29 (44751867-44752057)
               

               
               599-786, gnl|Hg17|chr11 (712397-712621)
               

               
               599-786, gnl|Mm7|chr7 (137774802-137774994)

	13-270, gnl\|bosTau2\|chr29 (44750442-44750687)
	13-270, gnl\|Hg17\|chr11 (710912-711229)
	13-270, gnl\|Mm7\|chr7 (137773215-137773529)

	311-464, gnl\|bosTau2\|chr29 (44750962-44751112)
	311-464, gnl\|Hg17\|chr11 (711564-711754)
	311-464, gnl\|Mm7\|chr7 (137773799-137773966)

	599-786, gnl\|bosTau2\|chr29 (44751867-44752057)
	599-786, gnl\|Hg17\|chr11 (712397-712621)
	599-786, gnl\|Mm7\|chr7 (137774802-137774994)