Non-Coding RNA Search

Ss1.1-Mixc-0029l20.3

Sequence:


               
               CGCACACACACATACACACACTCATATGCAACCTCCATGAAGACAGAACCTTGTTCTCTG
CTGAACTTCCAGCATTTAGAACAGTGACTGGAACAGGCTAGCTTCTCAGTGACTGAATAA
ACAGACCATTGTCCCCATTTTCCTGATGAGAGAAACTGAGGCTCAGACAGGTAACAGCGT
TTGCCCAAAGCTACAGAGCGAAGAAGTGATGGAGCTGAGAGGTGAACCCAGGTCCACTTG
AGCCTTATCCCTTGACGAGAGCCTGCCCACCCCACCCACCTCTCAGTGCCCCCTGGGCCC
AACACCCACCTCCCAGCAGCATCTCCTGCAGCAAGTTGTCAATCTTGGCCATGCCAAAGA
GCTTGATGAACTGGATCTGCTCGATCATCTGCCAGGTGATGCTCTGTAGGGTGGGCAGCA
GCAGCAGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCACACACACATACACACACTCATATGCAACCTCCATGAAGACAGAACCTTGTTCTCTG
CTGAACTTCCAGCATTTAGAACAGTGACTGGAACAGGCTAGCTTCTCAGTGACTGAATAA
ACAGACCATTGTCCCCATTTTCCTGATGAGAGAAACTGAGGCTCAGACAGGTAACAGCGT
TTGCCCAAAGCTACAGAGCGAAGAAGTGATGGAGCTGAGAGGTGAACCCAGGTCCACTTG
AGCCTTATCCCTTGACGAGAGCCTGCCCACCCCACCCACCTCTCAGTGCCCCCTGGGCCC
AACACCCACCTCCCAGCAGCATCTCCTGCAGCAAGTTGTCAATCTTGGCCATGCCAAAGA
GCTTGATGAACTGGATCTGCTCGATCATCTGCCAGGTGATGCTCTGTAGGGTGGGCAGCA
GCAGCAGCAGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               3-104, + strand, RNAz p=0.975643

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-104, + strand, RNAz p=0.975643

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               3-288, gnl|bosTau2|chr13 (53675776-53676057)
               

               
               3-288, gnl|canFam2|chr24 (34873333-34873515)
               

               
               3-288, gnl|echTel1|scaffold_208257 (1290-1202)
               

               
               3-288, gnl|hg17|chr20 (42486348-42486534)
               

               
               3-288, gnl|Hg17|chr20 (42486625-42486347)
               

               
               3-288, gnl|mm7|chr2 (163307293-163307498)
               

               
               3-288, gnl|panTro1|chr21 (44928478-44928664)
               

               
               3-288, gnl|rheMac2|chr10 (20026371-20026182)
               

               
               3-288, gnl|rn3|chr3 (154385046-154385209)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-288, gnl|bosTau2|chr13 (53675776-53676057)
               

               
               3-288, gnl|canFam2|chr24 (34873333-34873515)
               

               
               3-288, gnl|echTel1|scaffold_208257 (1290-1202)
               

               
               3-288, gnl|hg17|chr20 (42486348-42486534)
               

               
               3-288, gnl|Hg17|chr20 (42486625-42486347)
               

               
               3-288, gnl|mm7|chr2 (163307293-163307498)
               

               
               3-288, gnl|panTro1|chr21 (44928478-44928664)
               

               
               3-288, gnl|rheMac2|chr10 (20026371-20026182)
               

               
               3-288, gnl|rn3|chr3 (154385046-154385209)

	3-288, gnl\|bosTau2\|chr13 (53675776-53676057)
	3-288, gnl\|canFam2\|chr24 (34873333-34873515)
	3-288, gnl\|echTel1\|scaffold_208257 (1290-1202)
	3-288, gnl\|hg17\|chr20 (42486348-42486534)
	3-288, gnl\|Hg17\|chr20 (42486625-42486347)
	3-288, gnl\|mm7\|chr2 (163307293-163307498)
	3-288, gnl\|panTro1\|chr21 (44928478-44928664)
	3-288, gnl\|rheMac2\|chr10 (20026371-20026182)
	3-288, gnl\|rn3\|chr3 (154385046-154385209)