Ss1.1-Mixc-0030c14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGCTCTGCTCCTCCTGCCGGCCCTTGGCCTCCTGCAGCTCCAAATTCAAGCGACGGT TCTCCTGTTGTGCCATCTGGAGCTCGGCCTCGCTTTGCTCCTTGTCTGCCTGGACTTCCT TCAGCTGCCCAAGGAGCTTCTCTTGTTCCCGAGTCAGGGCCTTCACCGCGTCTCTAACCC TGTCCAGCTCCACCTCCTTCGTCAGCACTTTCTCACTGATGGTCTGGATGTCCTCTTCCA GCTCCAGGATGCGGGCCACGTGGTCTCCCTGTTGCCGGCTCAGGATGTCCCTCTCTTCCG TGAGCTCGCCATGGGACCGGGCAAGCCCCTTATACTGCTCCGAAAGCTCCGCATGCTCCT GCCTGGCGGTTGCCAGGGCCGTCTCAAGCTCCTGTACTCGGCTCCTCAGCTCCGTCACCT GCCCCTCCAGCTGCAGCTTCAGCTGCATCAGGTCATTCCTCTCTTGCTGGCTTTCATCCA GCTGGTTCTGCAGCACAGTTGCTTTGGGGACAACCAGCAGGATGTCAGAGCCCCCGTCAG TCTCCTCCAGGGTCACCAGTTCATCCATGGGCCGGGGCTCGCGGAACTGGAAAGGGGGGC TCTGCCCACACACCCGGCCCTGGCGGTTCACATACCGGAACTGGTAGAGCTGGGCTCCCG GTTTGGGTAGGTAGCTGGCTTGGAACTGGACACTGGTGTGGATGGGGGAACCATCAGTTA CACCTTCAGGCACCGAGGACCACACAAACGTGTGGTAATCCCGAACGCAGGCAGCCTCCA CCTTGAAGATGCCAATCCAGTCGCTGGCACTGGGCACGGTGCCTGGGGGAAGTGTGTAGT GACACTCCACCTTGGTGTTGGGGATGTAGGTCCGGGCTACGTTCAGAAAGCTGACTCCAC CCCGGGATGGTGCCCGGCTTAGTGATGATTCTTCCATTCTGCCCTCCAGATGTCTGCCCT CCCCACAGACGGATCAGCTGTTCCCTCACCTTTCACCAACAACAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGCTCTGCTCCTCCTGCCGGCCCTTGGCCTCCTGCAGCTCCAAATTCAAGCGACGGT TCTCCTGTTGTGCCATCTGGAGCTCGGCCTCGCTTTGCTCCTTGTCTGCCTGGACTTCCT TCAGCTGCCCAAGGAGCTTCTCTTGTTCCCGAGTCAGGGCCTTCACCGCGTCTCTAACCC TGTCCAGCTCCACCTCCTTCGTCAGCACTTTCTCACTGATGGTCTGGATGTCCTCTTCCA GCTCCAGGATGCGGGCCACGTGGTCTCCCTGTTGCCGGCTCAGGATGTCCCTCTCTTCCG TGAGCTCGCCATGGGACCGGGCAAGCCCCTTATACTGCTCCGAAAGCTCCGCATGCTCCT GCCTGGCGGTTGCCAGGGCCGTCTCAAGCTCCTGTACTCGGCTCCTCAGCTCCGTCACCT GCCCCTCCAGCTGCAGCTTCAGCTGCATCAGGTCATTCCTCTCTTGCTGGCTTTCATCCA GCTGGTTCTGCAGCACAGTTGCTTTGGGGACAACCAGCAGGATGTCAGAGCCCCCGTCAG TCTCCTCCAGGGTCACCAGTTCATCCATGGGCCGGGGCTCGCGGAACTGGAAAGGGGGGC TCTGCCCACACACCCGGCCCTGGCGGTTCACATACCGGAACTGGTAGAGCTGGGCTCCCG GTTTGGGTAGGTAGCTGGCTTGGAACTGGACACTGGTGTGGATGGGGGAACCATCAGTTA CACCTTCAGGCACCGAGGACCACACAAACGTGTGGTAATCCCGAACGCAGGCAGCCTCCA CCTTGAAGATGCCAATCCAGTCGCTGGCACTGGGCACGGTGCCTGGGGGAAGTGTGTAGT GACACTCCACCTTGGTGTTGGGGATGTAGGTCCGGGCTACGTTCAGAAAGCTGACTCCAC CCCGGGATGGTGCCCGGCTTAGTGATGATTCTTCCATTCTGCCCTCCAGATGTCTGCCCT CCCCACAGACGGATCAGCTGTTCCCTCACCTTTCACCAACAACAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 179-297, - strand, RNAz p=0.854959 | |
| 488-646, - strand, RNAz p=0.928583 | |
| 541-656, - strand, RNAz p=0.737291 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 179-297, - strand, RNAz p=0.854959 | |
| 488-646, - strand, RNAz p=0.928583 | |
| 541-656, - strand, RNAz p=0.737291 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 179-330, gnl|bosTau2|chr5 (25276182-25276031) | |
| 179-330, gnl|canFam2|chr27 (4533973-4533453) | |
| 179-330, gnl|echTel1|scaffold_291806 (14875-14385) | |
| 179-330, gnl|hg17|chr12 (52401423-52401952) | |
| 179-330, gnl|Hg17|chr12 (52401517-52401668) | |
| 179-330, gnl|loxAfr1|scaffold_19008 (14744-14219) | |
| 179-330, gnl|mm7|chr15 (102701775-102702286) | |
| 179-330, gnl|Mm7|chr15 (102701898-102702049) | |
| 179-330, gnl|oryCun1|scaffold_207706 (62903-63379) | |
| 179-330, gnl|panTro1|chr10 (53648080-53648609) | |
| 179-330, gnl|rheMac2|chr11 (50810084-50810611) | |
| 179-330, gnl|rn3|chr7 (141541275-141541748) | |
| 488-680, gnl|bosTau2|chr5 (25274083-25273891) | |
| 488-680, gnl|canFam2|chr27 (4530729-4530509) | |
| 488-680, gnl|danRer3|chr23 (48971543-48971775) | |
| 488-680, gnl|dasNov1|scaffold_13801 (23446-23226) | |
| 488-680, gnl|echTel1|scaffold_291806 (11990-11770) | |
| 488-680, gnl|fr1|chrUn (41227594-41227815) | |
| 488-680, gnl|hg17|chr12 (52403630-52403850) | |
| 488-680, gnl|Hg17|chr12 (52403644-52403836) | |
| 488-680, gnl|loxAfr1|scaffold_19008 (11605-11385) | |
| 488-680, gnl|mm7|chr15 (102703942-102704166) | |
| 488-680, gnl|Mm7|chr15 (102703960-102704152) | |
| 488-680, gnl|oryCun1|scaffold_207706 (65637-65857) | |
| 488-680, gnl|panTro1|chr10 (53650290-53650510) | |
| 488-680, gnl|rheMac2|chr11 (50812275-50812495) | |
| 488-680, gnl|rn3|chr7 (141543485-141543705) | |
| 488-680, gnl|tetNig1|chr9 (4148555-4148774) | |
| 780-962, gnl|bosTau2|chr5 (25272510-25272328) | |
| 780-962, gnl|canFam2|chr27 (4529305-4529186) | |
| 780-962, gnl|danRer3|chr23 (48972939-48973051) | |
| 780-962, gnl|dasNov1|scaffold_14092 (13944-13828) | |
| 780-962, gnl|fr1|chrUn (41229244-41229356) | |
| 780-962, gnl|hg17|chr12 (52405135-52405254) | |
| 780-962, gnl|Hg17|chr12 (52405136-52405318) | |
| 780-962, gnl|loxAfr1|scaffold_19008 (10151-10032) | |
| 780-962, gnl|mm7|chr15 (102705696-102705815) | |
| 780-962, gnl|Mm7|chr15 (102705697-102705879) | |
| 780-962, gnl|oryCun1|scaffold_207706 (66816-66935) | |
| 780-962, gnl|panTro1|chr10 (53651915-53652034) | |
| 780-962, gnl|rheMac2|chr11 (50813381-50813500) | |
| 780-962, gnl|rn3|chr7 (141544794-141544913) | |
| 780-962, gnl|tetNig1|chr9 (4149746-4149851) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-330, gnl|bosTau2|chr5 (25276182-25276031) | |
| 179-330, gnl|canFam2|chr27 (4533973-4533453) | |
| 179-330, gnl|echTel1|scaffold_291806 (14875-14385) | |
| 179-330, gnl|hg17|chr12 (52401423-52401952) | |
| 179-330, gnl|Hg17|chr12 (52401517-52401668) | |
| 179-330, gnl|loxAfr1|scaffold_19008 (14744-14219) | |
| 179-330, gnl|mm7|chr15 (102701775-102702286) | |
| 179-330, gnl|Mm7|chr15 (102701898-102702049) | |
| 179-330, gnl|oryCun1|scaffold_207706 (62903-63379) | |
| 179-330, gnl|panTro1|chr10 (53648080-53648609) | |
| 179-330, gnl|rheMac2|chr11 (50810084-50810611) | |
| 179-330, gnl|rn3|chr7 (141541275-141541748) | |
| 488-680, gnl|bosTau2|chr5 (25274083-25273891) | |
| 488-680, gnl|canFam2|chr27 (4530729-4530509) | |
| 488-680, gnl|danRer3|chr23 (48971543-48971775) | |
| 488-680, gnl|dasNov1|scaffold_13801 (23446-23226) | |
| 488-680, gnl|echTel1|scaffold_291806 (11990-11770) | |
| 488-680, gnl|fr1|chrUn (41227594-41227815) | |
| 488-680, gnl|hg17|chr12 (52403630-52403850) | |
| 488-680, gnl|Hg17|chr12 (52403644-52403836) | |
| 488-680, gnl|loxAfr1|scaffold_19008 (11605-11385) | |
| 488-680, gnl|mm7|chr15 (102703942-102704166) | |
| 488-680, gnl|Mm7|chr15 (102703960-102704152) | |
| 488-680, gnl|oryCun1|scaffold_207706 (65637-65857) | |
| 488-680, gnl|panTro1|chr10 (53650290-53650510) | |
| 488-680, gnl|rheMac2|chr11 (50812275-50812495) | |
| 488-680, gnl|rn3|chr7 (141543485-141543705) | |
| 488-680, gnl|tetNig1|chr9 (4148555-4148774) | |
| 780-962, gnl|bosTau2|chr5 (25272510-25272328) | |
| 780-962, gnl|canFam2|chr27 (4529305-4529186) | |
| 780-962, gnl|danRer3|chr23 (48972939-48973051) | |
| 780-962, gnl|dasNov1|scaffold_14092 (13944-13828) | |
| 780-962, gnl|fr1|chrUn (41229244-41229356) | |
| 780-962, gnl|hg17|chr12 (52405135-52405254) | |
| 780-962, gnl|Hg17|chr12 (52405136-52405318) | |
| 780-962, gnl|loxAfr1|scaffold_19008 (10151-10032) | |
| 780-962, gnl|mm7|chr15 (102705696-102705815) | |
| 780-962, gnl|Mm7|chr15 (102705697-102705879) | |
| 780-962, gnl|oryCun1|scaffold_207706 (66816-66935) | |
| 780-962, gnl|panTro1|chr10 (53651915-53652034) | |
| 780-962, gnl|rheMac2|chr11 (50813381-50813500) | |
| 780-962, gnl|rn3|chr7 (141544794-141544913) | |
| 780-962, gnl|tetNig1|chr9 (4149746-4149851) |