Ss1.1-Mixc-0030i15.3
|
CTACATCAAGCAGGAGGAGTTTTCTCCCCGAAGCCAGAACTCACAGCCTGAGGGTTTACT
GGTCAGAGCCCAGCACGAAGGAGTGGTCAGAGGTTCCACAGGTGCCATTGCGGAGGGCAG
CATAACCCGGGGAACGCCGTCCGGCAAACTCCCTGTGGAGAGCGTCCCTTCTCTGCGGGG
CTCCATCACCCAGGGCACCCCAGCTCTGTCCCAAGCTGGCATTCCAGCGGAGGCGTTGGT
AAAGGGATCCATTTCCAGACTGTCTGTTGAAGAGAGCAGTCCTGAGAAGGGCCGAGAGGA
GGCTGCATCCAAAGGCCATGTCATTTACGAGGGCAAAAGCGGACACATCTTATCCTACGA
CAATATTAAGAATGCCCGGGAAGGGACGAGGAGTCCGAGAACGGCTCACGAAATCAGTCT
GAAAAGAAGCTACGAGTCCGTGGAAGGAGCTCTAAAGCAGGGCCTACCCGTGAGGGAGTC
TCCTGGGTCCACACCGCTCGAGGGGCTGATATGTCGGGCGTTGCCCAGGGGGAGCCCTCA
CCCTGACCTCAAAGAAAGGACCGTGCCGTCCGGCTCCATAATGCAGGGCACGCCAAGGGC
GACAGCGGACAGCTTCGAAGACGGCCTCAAGTACCCCAAACAGATTAAGAGGGAGAGTCC
GCCCATCAGAGCCTTTGAAGGCGCCATTTCCAAAGGGAAGCCCTACGACGGCATCACCAC
CATCAAAGAGATGGGGCGCTCCGTGCACGAGATCCCCCGGCAGGACGCCCTGACCCAGGA
GAGCCGGAAGACGCCCGAGGTGGTGCCGGGCGCGAGGCCCCTGGTCGAGGGCTCTATCTC
CCAGGGCACACCCATCAAGTTTGACAGCAGCTCAGGCCAGTCTGCCATCAAACACAACGT
CAAGTCCTTGAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTACATCAAGCAGGAGGAGTTTTCTCCCCGAAGCCAGAACTCACAGCCTGAGGGTTTACT
GGTCAGAGCCCAGCACGAAGGAGTGGTCAGAGGTTCCACAGGTGCCATTGCGGAGGGCAG
CATAACCCGGGGAACGCCGTCCGGCAAACTCCCTGTGGAGAGCGTCCCTTCTCTGCGGGG
CTCCATCACCCAGGGCACCCCAGCTCTGTCCCAAGCTGGCATTCCAGCGGAGGCGTTGGT
AAAGGGATCCATTTCCAGACTGTCTGTTGAAGAGAGCAGTCCTGAGAAGGGCCGAGAGGA
GGCTGCATCCAAAGGCCATGTCATTTACGAGGGCAAAAGCGGACACATCTTATCCTACGA
CAATATTAAGAATGCCCGGGAAGGGACGAGGAGTCCGAGAACGGCTCACGAAATCAGTCT
GAAAAGAAGCTACGAGTCCGTGGAAGGAGCTCTAAAGCAGGGCCTACCCGTGAGGGAGTC
TCCTGGGTCCACACCGCTCGAGGGGCTGATATGTCGGGCGTTGCCCAGGGGGAGCCCTCA
CCCTGACCTCAAAGAAAGGACCGTGCCGTCCGGCTCCATAATGCAGGGCACGCCAAGGGC
GACAGCGGACAGCTTCGAAGACGGCCTCAAGTACCCCAAACAGATTAAGAGGGAGAGTCC
GCCCATCAGAGCCTTTGAAGGCGCCATTTCCAAAGGGAAGCCCTACGACGGCATCACCAC
CATCAAAGAGATGGGGCGCTCCGTGCACGAGATCCCCCGGCAGGACGCCCTGACCCAGGA
GAGCCGGAAGACGCCCGAGGTGGTGCCGGGCGCGAGGCCCCTGGTCGAGGGCTCTATCTC
CCAGGGCACACCCATCAAGTTTGACAGCAGCTCAGGCCAGTCTGCCATCAAACACAACGT
CAAGTCCTTGAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
663-816, - strand, RNAmicro p=0.999984 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
663-816, - strand, RNAmicro p=0.999984 |
|
191-365, gnl|bosTau2|chr19 (23926196-23926370) |
|
191-365, gnl|canFam2|chr5 (42807066-42806855) |
|
191-365, gnl|danRer3|chr5 (49183151-49182958) |
|
191-365, gnl|dasNov1|scaffold_875 (74220-74007) |
|
191-365, gnl|echTel1|scaffold_323836 (95866-96075) |
|
191-365, gnl|fr1|chrUn (259067863-259067653) |
|
191-365, gnl|galGal2|chr19 (6050176-6050386) |
|
191-365, gnl|hg17|chr17 (15919551-15919764) |
|
191-365, gnl|Hg17|chr17 (15919744-15919570) |
|
191-365, gnl|loxAfr1|scaffold_8822 (103922-104131) |
|
191-365, gnl|mm7|chr11 (62432916-62433128) |
|
191-365, gnl|Mm7|chr11 (62433107-62432933) |
|
191-365, gnl|monDom2|scaffold_86 (5536886-5537105) |
|
191-365, gnl|oryCun1|scaffold_211350 (136644-136857) |
|
191-365, gnl|panTro1|chr19_random (4797134-4797347) |
|
191-365, gnl|rheMac2|chr16 (16388143-16387931) |
|
191-365, gnl|rn3|chr10 (48527919-48528130) |
|
191-365, gnl|tetNig1|chr7 (2112483-2112676) |
|
191-365, gnl|xenTro1|scaffold_454 (163616-163435) |
| |
|
587-845, gnl|bosTau2|chr19 (23929316-23929574) |
|
587-845, gnl|Hg17|chr17 (15915705-15915447) |
|
587-845, gnl|Mm7|chr11 (62426447-62426189) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
191-365, gnl|bosTau2|chr19 (23926196-23926370) |
|
191-365, gnl|canFam2|chr5 (42807066-42806855) |
|
191-365, gnl|danRer3|chr5 (49183151-49182958) |
|
191-365, gnl|dasNov1|scaffold_875 (74220-74007) |
|
191-365, gnl|echTel1|scaffold_323836 (95866-96075) |
|
191-365, gnl|fr1|chrUn (259067863-259067653) |
|
191-365, gnl|galGal2|chr19 (6050176-6050386) |
|
191-365, gnl|hg17|chr17 (15919551-15919764) |
|
191-365, gnl|Hg17|chr17 (15919744-15919570) |
|
191-365, gnl|loxAfr1|scaffold_8822 (103922-104131) |
|
191-365, gnl|mm7|chr11 (62432916-62433128) |
|
191-365, gnl|Mm7|chr11 (62433107-62432933) |
|
191-365, gnl|monDom2|scaffold_86 (5536886-5537105) |
|
191-365, gnl|oryCun1|scaffold_211350 (136644-136857) |
|
191-365, gnl|panTro1|chr19_random (4797134-4797347) |
|
191-365, gnl|rheMac2|chr16 (16388143-16387931) |
|
191-365, gnl|rn3|chr10 (48527919-48528130) |
|
191-365, gnl|tetNig1|chr7 (2112483-2112676) |
|
191-365, gnl|xenTro1|scaffold_454 (163616-163435) |
| |
|
587-845, gnl|bosTau2|chr19 (23929316-23929574) |
|
587-845, gnl|Hg17|chr17 (15915705-15915447) |
|
587-845, gnl|Mm7|chr11 (62426447-62426189) |
