Non-Coding RNA Search

Ss1.1-Mixc-0030n03.5

Sequence:


               
               AAAAAGGTGCTGTGCCTCACGGTGCCTGCGCTGCCTGCTGCCCTGGACCGCGGAGGAGGC
ACCCACGCTCCGGCCTCAGCCTGTCCACGGCTTTGCAGGATGAGGCCACAGGGGTCCTCA
GCCTCTCCTGCCCTCTGGGTCCTGGGGTGCCTCACCCTGCTCCTCTGGCTGTGGGTGCTG
TGCACAGCCTGCCACAGGAGGCGGGCAGGGAGGCAGGTGTCCAGGCTGCAGGGCATGCAG
GGCGGTGGGATGCCAACGAAAGCGGTGAGTGCCAGGTATCCCCAAGGCCATGCTGGGGCT
GGCAGGGGACTAACTGGCCGTCCTTGCCCCCAGTCACTGCTGAGACCACCCCACCTCTGC
TCCCTCAGCAAGTCAGACACTAGACTGCACGAGCTGTGCCGAGGTCAGCCCTGCAGCAGA
GCCCCGCGGCCTGCCAGCGTGGATCTCCTGTGCCCACGATGGCTAGAGGTGTCCAGAGGC
AAGACCAGGCCCCCAGAAGCCTTCTCACTCCAGGAGCTGCCCGCAGCCGTGCCCTTCACC
GACCCCGAGGCCACTTATTCCAACGTGGGGCTGGCTGTGATCCCCAGAGCCAGGCTGGCA
TTCGGCTCTGGGGTGTGGGTAGGGGCACACAGCTGTGCCAGGCTGGGGCCTGAGGCCACA
CCGGTGGCGTCTGAGTATGCCTGCATCCAGAAGCTCAAGGGGACAGGCCAGGTCCCCCAG
GGCCTGGGGCAGGGGCGTGCTGAGGTCATCCCAGCCAATCAGGTAAAGTGAAGGGGGTGG
TGGTGGGGGGAGGATGTCTGGCAGAGTGGCTGGTCTGACCCTTCCCTGGTGGGCTTCCTC
TCTCCAGGTGGACAGCCTGTACTCCAAGGTCAGCAAGCCTAAAAGGAGGGACCCCGGACC
TGCCTCAGACCAGCCAGACCCCAAGGGTGGGGGCACAGTTTTAGCTCTGGGGGGTGACCT
GGCCTATGACGCCCTCCCACCGAAGAGCGTGGGTGTGAACGGGAGCTTCCTGGAAAACGT
GTATGAGAGCATCCAGGAGATGGGGGGCCCTGGAGCCTCCAAGCTCTAGCTCTTGGCAGG
AGGGGCCATAGGCCGGGCATGGAGACCCCCTGCTTCCTGTCTAATCCTGCCGGGGGAGCC
TCCCTCGCCGGCTCCATGAACTCCCTGCCTCCAGAGCGGGGTGCACCCCCGACTTCTCCT
ACACACACAGCGGCCGGCACGGGTTCCAGAGAGCAGGGCTGCCAGCCTGGTCCTGGCTGC
CACAGCCTTTCCAGGGCAGCGTCTCAATAAACCCCCCCGGCTCCCGGAGCCGGAGCCGCA
ACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGTGCTGTGCCTCACGGTGCCTGCGCTGCCTGCTGCCCTGGACCGCGGAGGAGGC
ACCCACGCTCCGGCCTCAGCCTGTCCACGGCTTTGCAGGATGAGGCCACAGGGGTCCTCA
GCCTCTCCTGCCCTCTGGGTCCTGGGGTGCCTCACCCTGCTCCTCTGGCTGTGGGTGCTG
TGCACAGCCTGCCACAGGAGGCGGGCAGGGAGGCAGGTGTCCAGGCTGCAGGGCATGCAG
GGCGGTGGGATGCCAACGAAAGCGGTGAGTGCCAGGTATCCCCAAGGCCATGCTGGGGCT
GGCAGGGGACTAACTGGCCGTCCTTGCCCCCAGTCACTGCTGAGACCACCCCACCTCTGC
TCCCTCAGCAAGTCAGACACTAGACTGCACGAGCTGTGCCGAGGTCAGCCCTGCAGCAGA
GCCCCGCGGCCTGCCAGCGTGGATCTCCTGTGCCCACGATGGCTAGAGGTGTCCAGAGGC
AAGACCAGGCCCCCAGAAGCCTTCTCACTCCAGGAGCTGCCCGCAGCCGTGCCCTTCACC
GACCCCGAGGCCACTTATTCCAACGTGGGGCTGGCTGTGATCCCCAGAGCCAGGCTGGCA
TTCGGCTCTGGGGTGTGGGTAGGGGCACACAGCTGTGCCAGGCTGGGGCCTGAGGCCACA
CCGGTGGCGTCTGAGTATGCCTGCATCCAGAAGCTCAAGGGGACAGGCCAGGTCCCCCAG
GGCCTGGGGCAGGGGCGTGCTGAGGTCATCCCAGCCAATCAGGTAAAGTGAAGGGGGTGG
TGGTGGGGGGAGGATGTCTGGCAGAGTGGCTGGTCTGACCCTTCCCTGGTGGGCTTCCTC
TCTCCAGGTGGACAGCCTGTACTCCAAGGTCAGCAAGCCTAAAAGGAGGGACCCCGGACC
TGCCTCAGACCAGCCAGACCCCAAGGGTGGGGGCACAGTTTTAGCTCTGGGGGGTGACCT
GGCCTATGACGCCCTCCCACCGAAGAGCGTGGGTGTGAACGGGAGCTTCCTGGAAAACGT
GTATGAGAGCATCCAGGAGATGGGGGGCCCTGGAGCCTCCAAGCTCTAGCTCTTGGCAGG
AGGGGCCATAGGCCGGGCATGGAGACCCCCTGCTTCCTGTCTAATCCTGCCGGGGGAGCC
TCCCTCGCCGGCTCCATGAACTCCCTGCCTCCAGAGCGGGGTGCACCCCCGACTTCTCCT
ACACACACAGCGGCCGGCACGGGTTCCAGAGAGCAGGGCTGCCAGCCTGGTCCTGGCTGC
CACAGCCTTTCCAGGGCAGCGTCTCAATAAACCCCCCCGGCTCCCGGAGCCGGAGCCGCA
ACAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               82-198, - strand, RNAz p=0.634553
               

               
               523-695, - strand, RNAz p=0.996522
               

               
               962-1149, - strand, RNAz p=0.984779

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-198, - strand, RNAz p=0.634553
               

               
               523-695, - strand, RNAz p=0.996522
               

               
               962-1149, - strand, RNAz p=0.984779

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               508-632, - strand, RNAmicro p=0.993321
               

               
               637-695, + strand, RNAmicro p=0.990522

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               508-632, - strand, RNAmicro p=0.993321
               

               
               637-695, + strand, RNAmicro p=0.990522

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               63-198, gnl|bosTau2|chr13 (35101005-35100868)
               

               
               63-198, gnl|Hg17|chr20 (61839310-61839445)
               

               
               63-198, gnl|Mm7|chr2 (181883086-181883227)
               


               
               417-1165, gnl|bosTau2|chr13 (35100381-35099608)
               

               
               417-1165, gnl|Hg17|chr20 (61839975-61840703)
               

               
               417-1165, gnl|Mm7|chr2 (181883706-181884397)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-198, gnl|bosTau2|chr13 (35101005-35100868)
               

               
               63-198, gnl|Hg17|chr20 (61839310-61839445)
               

               
               63-198, gnl|Mm7|chr2 (181883086-181883227)
               


               
               417-1165, gnl|bosTau2|chr13 (35100381-35099608)
               

               
               417-1165, gnl|Hg17|chr20 (61839975-61840703)
               

               
               417-1165, gnl|Mm7|chr2 (181883706-181884397)

	82-198, - strand, RNAz p=0.634553
	523-695, - strand, RNAz p=0.996522
	962-1149, - strand, RNAz p=0.984779

	508-632, - strand, RNAmicro p=0.993321
	637-695, + strand, RNAmicro p=0.990522

	63-198, gnl\|bosTau2\|chr13 (35101005-35100868)
	63-198, gnl\|Hg17\|chr20 (61839310-61839445)
	63-198, gnl\|Mm7\|chr2 (181883086-181883227)

	417-1165, gnl\|bosTau2\|chr13 (35100381-35099608)
	417-1165, gnl\|Hg17\|chr20 (61839975-61840703)
	417-1165, gnl\|Mm7\|chr2 (181883706-181884397)