Non-Coding RNA Search

Ss1.1-Mixc-0030p13.5

Sequence:


               
               GTAGGGTAGTGGCATGGTGGCGGGTGGCATCTGGCTGAAATGAGGGAAGGGTTGGGGTAG
GGGGAGAAGGGCCACCATCTCCCGAGGCCTGGTACCTTCTCCCTCCAAATTCTTCATAAA
TAAAACTTCACAGTAATAGAGGAATGTCCACTTCCAGGGTCAAACCGGCTGCTTTCTGGC
TGGGGAGCCAGGCCTCATGGGGTGCAGGAGAGCCCTCGGCTGGGGCTGGTCGGGCAGCAC
CGTGACTGCCGGGGCCAGAGCGCTGCTCTTGGGCCCCCGCATCAGGGCGGAGGGTGGGGG
CTACAGTCCATCCAGAGCTTCTGAGGATTGCTGAGGTAGTCAGAGCGGCCGGTCGTGCTT
CCAGACGGAGCCGATGGAGCATCAGAGGACACGGCTGGTCAGGGGGGAGGCCTGTGAGCC
TGCACAGGGTCGAGCTCCTGAAAGGGTGGCTTGGGCCCGTGGGGGGACCGAGGCATTTTC
ACAGGAGGAGAATCTCTGTGAAGACAGGAGGGCAGCCGCAGACCCATCCAGGGCCAGGCC
CAGCCCAGGTACCTGAGCACGGGGTTCCTTCAGGGGCCTCCGAGGGAGCCAGGCCGCGGA
CTCAGGTGAGGGCTGCCAGTGGCCAGGGGCCTCGCTCCCCAGGGGACCTTCTTCAGTCTG
GCAGCCCCAAAGGTTCCTGGGCCTCAGCTTCACTCTCTGGAGCGTGTCCACCGGCGGGGG
GTGGGGGGGACCCTCCTTCCGGCTCCCGACCCCGCTACCACACCCATGGGCACAGAAGGC
CCAACCCTCCACCTCCCCGCGGGGGGACCAAAGGCTGCGCCCTGGCGTTGCAGCTGCAGC
CCCAGGGCTTCCGGGGCTCAAGGGCACGCGGCCTGGCCTATCCTGGCATCCCGCCTCCTG
GGGTCAGAGCACCTGGAGCTTGCGGGAGCAGGTGAGATTGCCGTGCACCAGCCGCCACAT
GGCCAGCAGCTCAGTGGGCAGCAGCTTGTGCACGACGAGCATGGAGCGGAAAAAGCAGGG
CTCCTTGTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGGTAGTGGCATGGTGGCGGGTGGCATCTGGCTGAAATGAGGGAAGGGTTGGGGTAG
GGGGAGAAGGGCCACCATCTCCCGAGGCCTGGTACCTTCTCCCTCCAAATTCTTCATAAA
TAAAACTTCACAGTAATAGAGGAATGTCCACTTCCAGGGTCAAACCGGCTGCTTTCTGGC
TGGGGAGCCAGGCCTCATGGGGTGCAGGAGAGCCCTCGGCTGGGGCTGGTCGGGCAGCAC
CGTGACTGCCGGGGCCAGAGCGCTGCTCTTGGGCCCCCGCATCAGGGCGGAGGGTGGGGG
CTACAGTCCATCCAGAGCTTCTGAGGATTGCTGAGGTAGTCAGAGCGGCCGGTCGTGCTT
CCAGACGGAGCCGATGGAGCATCAGAGGACACGGCTGGTCAGGGGGGAGGCCTGTGAGCC
TGCACAGGGTCGAGCTCCTGAAAGGGTGGCTTGGGCCCGTGGGGGGACCGAGGCATTTTC
ACAGGAGGAGAATCTCTGTGAAGACAGGAGGGCAGCCGCAGACCCATCCAGGGCCAGGCC
CAGCCCAGGTACCTGAGCACGGGGTTCCTTCAGGGGCCTCCGAGGGAGCCAGGCCGCGGA
CTCAGGTGAGGGCTGCCAGTGGCCAGGGGCCTCGCTCCCCAGGGGACCTTCTTCAGTCTG
GCAGCCCCAAAGGTTCCTGGGCCTCAGCTTCACTCTCTGGAGCGTGTCCACCGGCGGGGG
GTGGGGGGGACCCTCCTTCCGGCTCCCGACCCCGCTACCACACCCATGGGCACAGAAGGC
CCAACCCTCCACCTCCCCGCGGGGGGACCAAAGGCTGCGCCCTGGCGTTGCAGCTGCAGC
CCCAGGGCTTCCGGGGCTCAAGGGCACGCGGCCTGGCCTATCCTGGCATCCCGCCTCCTG
GGGTCAGAGCACCTGGAGCTTGCGGGAGCAGGTGAGATTGCCGTGCACCAGCCGCCACAT
GGCCAGCAGCTCAGTGGGCAGCAGCTTGTGCACGACGAGCATGGAGCGGAAAAAGCAGGG
CTCCTTGTTCAT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               75-193, + strand, RNAz p=0.945725
               

               
               403-550, + strand, RNAz p=0.999109
               

               
               412-514, - strand, RNAz p=0.996811
               

               
               746-1032, - strand, RNAz p=0.993912

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-193, + strand, RNAz p=0.945725
               

               
               403-550, + strand, RNAz p=0.999109
               

               
               412-514, - strand, RNAz p=0.996811
               

               
               746-1032, - strand, RNAz p=0.993912

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               833-925, + strand, RNAmicro p=0.999984

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               833-925, + strand, RNAmicro p=0.999984

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145236, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145236, -

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               75-395, gnl|bosTau2|chr2 (71483492-71483172)
               

               
               75-395, gnl|Hg17|chr2 (232090044-232089740)
               

               
               75-395, gnl|Mm7|chr1 (86207757-86207437)
               


               
               403-576, gnl|bosTau2|chr2 (71483044-71482861)
               

               
               403-576, gnl|canFam2|chr25 (46290463-46290698)
               

               
               403-576, gnl|echTel1|scaffold_157446 (3484-3307)
               

               
               403-576, gnl|hg17|chr2 (232089468-232089683)
               

               
               403-576, gnl|Hg17|chr2 (232089637-232089466)
               

               
               403-576, gnl|loxAfr1|scaffold_55518 (3023-3212)
               

               
               403-576, gnl|mm7|chr1 (86207167-86207388)
               

               
               403-576, gnl|Mm7|chr1 (86207335-86207165)
               

               
               403-576, gnl|monDom2|scaffold_167 (79631-79826)
               

               
               403-576, gnl|rheMac2|chr12 (95269957-95270172)
               

               
               403-576, gnl|rn3|chr9 (85255821-85256034)
               


               
               738-1032, gnl|bosTau2|chr2 (71482748-71482456)
               

               
               738-1032, gnl|Hg17|chr2 (232089334-232089013)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-395, gnl|bosTau2|chr2 (71483492-71483172)
               

               
               75-395, gnl|Hg17|chr2 (232090044-232089740)
               

               
               75-395, gnl|Mm7|chr1 (86207757-86207437)
               


               
               403-576, gnl|bosTau2|chr2 (71483044-71482861)
               

               
               403-576, gnl|canFam2|chr25 (46290463-46290698)
               

               
               403-576, gnl|echTel1|scaffold_157446 (3484-3307)
               

               
               403-576, gnl|hg17|chr2 (232089468-232089683)
               

               
               403-576, gnl|Hg17|chr2 (232089637-232089466)
               

               
               403-576, gnl|loxAfr1|scaffold_55518 (3023-3212)
               

               
               403-576, gnl|mm7|chr1 (86207167-86207388)
               

               
               403-576, gnl|Mm7|chr1 (86207335-86207165)
               

               
               403-576, gnl|monDom2|scaffold_167 (79631-79826)
               

               
               403-576, gnl|rheMac2|chr12 (95269957-95270172)
               

               
               403-576, gnl|rn3|chr9 (85255821-85256034)
               


               
               738-1032, gnl|bosTau2|chr2 (71482748-71482456)
               

               
               738-1032, gnl|Hg17|chr2 (232089334-232089013)

	75-193, + strand, RNAz p=0.945725
	403-550, + strand, RNAz p=0.999109
	412-514, - strand, RNAz p=0.996811
	746-1032, - strand, RNAz p=0.993912

	75-395, gnl\|bosTau2\|chr2 (71483492-71483172)
	75-395, gnl\|Hg17\|chr2 (232090044-232089740)
	75-395, gnl\|Mm7\|chr1 (86207757-86207437)

	403-576, gnl\|bosTau2\|chr2 (71483044-71482861)
	403-576, gnl\|canFam2\|chr25 (46290463-46290698)
	403-576, gnl\|echTel1\|scaffold_157446 (3484-3307)
	403-576, gnl\|hg17\|chr2 (232089468-232089683)
	403-576, gnl\|Hg17\|chr2 (232089637-232089466)
	403-576, gnl\|loxAfr1\|scaffold_55518 (3023-3212)
	403-576, gnl\|mm7\|chr1 (86207167-86207388)
	403-576, gnl\|Mm7\|chr1 (86207335-86207165)
	403-576, gnl\|monDom2\|scaffold_167 (79631-79826)
	403-576, gnl\|rheMac2\|chr12 (95269957-95270172)
	403-576, gnl\|rn3\|chr9 (85255821-85256034)

	738-1032, gnl\|bosTau2\|chr2 (71482748-71482456)
	738-1032, gnl\|Hg17\|chr2 (232089334-232089013)