Non-Coding RNA Search

Ss1.1-Mixc-0031,c19.3

Sequence:


               
               GTGACAGGGCACTGATTAGCACCCATGGTAGTTTTGTGCTTTTGGCTAGTATTTGAGGAA
TAGGTGGGTCTGTTTTTTTAAATATTGAAGTTCAGGTTAAAATAGGTGACCTTCATTTTG
ATAGTTGCAAGTAAAATGCTCAAAAGTGCCTTTTCCTACATGGGGCTGACTTGTTATTTA
GAGAAGCAGTTACTCAGCTAGTTCCATCTTGTATTTGAACTGGGGAAGCACTTAAGTACA
TTGCATTCATATTCTATCGAGTTGTTATAAAACTGAACAAGTTTTGGGGGATTTAGTTTG
TCTTAGAGTTCCGGAAGCTTTCACAAGAAGTTAATCATAGCACAGTGTTACCTTGACAGT
TTAGTACCTTGCCTTAACACTAGCCTTGTGCAAATTGGTTTGTCAGAGGGCTCTCAGTCA
GTCTGGATAGTGAGGCAGGATAAGCAAAAGCCCAGAGTCAGTGTAGCAGGGAGGTTTAGT
TTTAGGAGTTTCCCCTTCTCCCCTGGAACTACAGGTTCCTACTCTTCTGGATTCTTCCAC
TCCCATTTGGGATTATCCGTGCCACATGGCAGCAATCCTCTCCCATTTACAGTTCTTCCT
CATTTCCCTTTCCTCCCCCACCCACCCCCTTCTTACCTCTTTGCTTTCCTTCCCTCCCTC
CCCTTTATTCAGTTGACCACCCTCTAAAAGCTTGCAGCCTCCTCTTCGAGTGGCCCTGTT
GTCATGGATTATTCCCATGGGCCTTTTTAAATGAACAAGTTCATGCAGTGTCCACAGATG
GACCTGTCTTTTGTTCCTTTGTGACAAAGTGGGCTCTGTAGAGGTTCAATTTAATCCCAC
ACTGACCAGAAGCTGTCATCAGCTCTGTTGTCCCGCCTCTTTATTCTTACTGAAAATAGC
CCAGTTGTGCAGTATGAAATCTGCCACTATAGGTAACTTTTTTTTTCTTTTTAATTCACT
AATTACAGCTCGTTTCAAATTGTGTTGTGAGCTCCTTTTTAAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACAGGGCACTGATTAGCACCCATGGTAGTTTTGTGCTTTTGGCTAGTATTTGAGGAA
TAGGTGGGTCTGTTTTTTTAAATATTGAAGTTCAGGTTAAAATAGGTGACCTTCATTTTG
ATAGTTGCAAGTAAAATGCTCAAAAGTGCCTTTTCCTACATGGGGCTGACTTGTTATTTA
GAGAAGCAGTTACTCAGCTAGTTCCATCTTGTATTTGAACTGGGGAAGCACTTAAGTACA
TTGCATTCATATTCTATCGAGTTGTTATAAAACTGAACAAGTTTTGGGGGATTTAGTTTG
TCTTAGAGTTCCGGAAGCTTTCACAAGAAGTTAATCATAGCACAGTGTTACCTTGACAGT
TTAGTACCTTGCCTTAACACTAGCCTTGTGCAAATTGGTTTGTCAGAGGGCTCTCAGTCA
GTCTGGATAGTGAGGCAGGATAAGCAAAAGCCCAGAGTCAGTGTAGCAGGGAGGTTTAGT
TTTAGGAGTTTCCCCTTCTCCCCTGGAACTACAGGTTCCTACTCTTCTGGATTCTTCCAC
TCCCATTTGGGATTATCCGTGCCACATGGCAGCAATCCTCTCCCATTTACAGTTCTTCCT
CATTTCCCTTTCCTCCCCCACCCACCCCCTTCTTACCTCTTTGCTTTCCTTCCCTCCCTC
CCCTTTATTCAGTTGACCACCCTCTAAAAGCTTGCAGCCTCCTCTTCGAGTGGCCCTGTT
GTCATGGATTATTCCCATGGGCCTTTTTAAATGAACAAGTTCATGCAGTGTCCACAGATG
GACCTGTCTTTTGTTCCTTTGTGACAAAGTGGGCTCTGTAGAGGTTCAATTTAATCCCAC
ACTGACCAGAAGCTGTCATCAGCTCTGTTGTCCCGCCTCTTTATTCTTACTGAAAATAGC
CCAGTTGTGCAGTATGAAATCTGCCACTATAGGTAACTTTTTTTTTCTTTTTAATTCACT
AATTACAGCTCGTTTCAAATTGTGTTGTGAGCTCCTTTTTAAAGAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               682-956, - strand, RNAz p=0.986988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               682-956, - strand, RNAz p=0.986988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-1008, gnl|bosTau2|chr5 (18983525-18982545)
               

               
               8-1008, gnl|Hg17|chr12 (52143351-52144711)
               

               
               8-1008, gnl|Mm7|chr15 (102471097-102471992)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1008, gnl|bosTau2|chr5 (18983525-18982545)
               

               
               8-1008, gnl|Hg17|chr12 (52143351-52144711)
               

               
               8-1008, gnl|Mm7|chr15 (102471097-102471992)

	8-1008, gnl\|bosTau2\|chr5 (18983525-18982545)
	8-1008, gnl\|Hg17\|chr12 (52143351-52144711)
	8-1008, gnl\|Mm7\|chr15 (102471097-102471992)