Non-Coding RNA Search

Ss1.1-Mixc-0031f08.3

Sequence:


               
               AACGCTCCACCATGGGGCTGGCCTGGGGACTCAGTGTCCTGTTTCTGTTGCATGTGTGTG
GCTCCAACCGCATTCCAGAGTCTGGGGGAGACAACAGCGTCTTTGACATCTTTGAACTCA
CCGGGGCTGCCCGAAAGGGCTCTGGGCGCCGACTAGTGAAGGGTCCTGACCCTTCCAGCC
CAGCTTTCCGCATTGAGGATGCCAACCTGATCCCCCCTGTCCCTGATGACAAGTTCCAAG
ACCTAGTGGATGCTGTGCGAGCAGAGAAAGGTTTCCTCCTCCTGGCCTCCCTGAGGCAAA
TGAAGAAGACCCGGGGCACGCTGCTGGCCGTGGAGCGGAAAGACCATTCTGGCCAGGTCT
TCAGCGTGGTCTCCAACGGCAAGGCGGGCACCCTGGACCTGAGCCTGACCGTGCAGGGGA
AGCAGCAGGTGGTGTCAGTGGAGGAAGCCCTCCTGGCCACTGGTCAGTGGAAGAGCATCA
CCCTATTTGTGCAGGAGGACAGGGCCCAGCTGTACATCGACTGCGAGAAGATGGAGAATG
CCGAGCTGGACGTTCCCATCCAAAGCATCTTCACCAGGGACCTGGCCAGCATCGCCAATC
TCCGCATCGCAAAAGGAGGTGTCAATGACAATTTTCAGGGGGTGCTGCAAAACGTGAGGT
TTGTCTTTGGAACCACACCAGAAGACATCCTCAGGAACAAAGGTTGCTCCAGCTCTACCA
ATGTCCTTCTCACCCTGGACAACAATGTGGTGAATGGGTCCAGCCCCGCCATCCGCACCA
ACTACATTGGCCACAAGACGAAGGATCTGCAAGCCATCTGCGGCATCTCCTGTGATGAGC
TGTCCAGCATGGTCCTGGAGCTCAGGGGCCTGCGCACCATTGTGACCACGCTGCAGGACA
GCATCCGCAAAGTGACTGAAGAGAACAAAGAGTTGGCCAGTGAGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGCTCCACCATGGGGCTGGCCTGGGGACTCAGTGTCCTGTTTCTGTTGCATGTGTGTG
GCTCCAACCGCATTCCAGAGTCTGGGGGAGACAACAGCGTCTTTGACATCTTTGAACTCA
CCGGGGCTGCCCGAAAGGGCTCTGGGCGCCGACTAGTGAAGGGTCCTGACCCTTCCAGCC
CAGCTTTCCGCATTGAGGATGCCAACCTGATCCCCCCTGTCCCTGATGACAAGTTCCAAG
ACCTAGTGGATGCTGTGCGAGCAGAGAAAGGTTTCCTCCTCCTGGCCTCCCTGAGGCAAA
TGAAGAAGACCCGGGGCACGCTGCTGGCCGTGGAGCGGAAAGACCATTCTGGCCAGGTCT
TCAGCGTGGTCTCCAACGGCAAGGCGGGCACCCTGGACCTGAGCCTGACCGTGCAGGGGA
AGCAGCAGGTGGTGTCAGTGGAGGAAGCCCTCCTGGCCACTGGTCAGTGGAAGAGCATCA
CCCTATTTGTGCAGGAGGACAGGGCCCAGCTGTACATCGACTGCGAGAAGATGGAGAATG
CCGAGCTGGACGTTCCCATCCAAAGCATCTTCACCAGGGACCTGGCCAGCATCGCCAATC
TCCGCATCGCAAAAGGAGGTGTCAATGACAATTTTCAGGGGGTGCTGCAAAACGTGAGGT
TTGTCTTTGGAACCACACCAGAAGACATCCTCAGGAACAAAGGTTGCTCCAGCTCTACCA
ATGTCCTTCTCACCCTGGACAACAATGTGGTGAATGGGTCCAGCCCCGCCATCCGCACCA
ACTACATTGGCCACAAGACGAAGGATCTGCAAGCCATCTGCGGCATCTCCTGTGATGAGC
TGTCCAGCATGGTCCTGGAGCTCAGGGGCCTGCGCACCATTGTGACCACGCTGCAGGACA
GCATCCGCAAAGTGACTGAAGAGAACAAAGAGTTGGCCAGTGAGCTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|339672|gb|AAA61178.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|339672|gb|AAA61178.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               515-914, + strand, RNAz p=0.882211

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               515-914, + strand, RNAz p=0.882211

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               76-648, gnl|bosTau2|chr10 (28070442-28069870)
               

               
               76-648, gnl|Hg17|chr15 (37661683-37662255)
               

               
               76-648, gnl|Mm7|chr2 (117853815-117854387)
               


               
               715-914, gnl|bosTau2|chr10 (28068581-28068382)
               

               
               715-914, gnl|Hg17|chr15 (37663481-37663680)
               

               
               715-914, gnl|Mm7|chr2 (117855502-117855701)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-648, gnl|bosTau2|chr10 (28070442-28069870)
               

               
               76-648, gnl|Hg17|chr15 (37661683-37662255)
               

               
               76-648, gnl|Mm7|chr2 (117853815-117854387)
               


               
               715-914, gnl|bosTau2|chr10 (28068581-28068382)
               

               
               715-914, gnl|Hg17|chr15 (37663481-37663680)
               

               
               715-914, gnl|Mm7|chr2 (117855502-117855701)

	76-648, gnl\|bosTau2\|chr10 (28070442-28069870)
	76-648, gnl\|Hg17\|chr15 (37661683-37662255)
	76-648, gnl\|Mm7\|chr2 (117853815-117854387)

	715-914, gnl\|bosTau2\|chr10 (28068581-28068382)
	715-914, gnl\|Hg17\|chr15 (37663481-37663680)
	715-914, gnl\|Mm7\|chr2 (117855502-117855701)