Non-Coding RNA Search

Ss1.1-Mixc-0031g08.3

Sequence:


               
               GGAGCAATTACGGCGGCAGATCCGCCTCCTGCAGGGTCTGATCGATGACTACAAAAACCT
CCACGGCCATGTCTCTGCCCCAGGCACCTCTGCGGCTTCCCAGTGGCAGCCGGCCGCTTA
CAACAGCAGCAGGGCCTTCAGTGCTCACGACCCTCGTCCCAGCCGGAGGGGCTTCTCCCC
AAGCCATGGGCCTGCCTGGCGCAAGAAATACTCCCTCGTGAACCGGCCCCTGGGGTCCTC
CTCGGACCTGCCCGGTGACTGTGCCACACAGCCGCCCCTTGGGGCTGGGGGCAGCCAGGG
TCCCACCCCCGAGCAGTACGTCTTGGAGAGGCAGGTCCAGCTCAGTCCAGATCAGAACAT
GGTCATCAAGATAAAACCACCACCCAAGCCAGGCTCGGCCAGTGCTGCAGGGGTCCTGCG
GGGCTCCCTGGACGAACACGAAGGCCCTTCCTGGAGCCCCCACAGGCCTCAGGAGGGTGG
GGGTGAGGCCCCTGGTGGGCAGTGGCAGCCCTCGAGGCCGGGAAGAGCCAAGGGCAGCTG
CGGGGCAGAGGACCCGCTTCCAGTCTGCCGGAGGGCGCCGGGCAAGCTGCGCGTGGTCAA
GTCAATGAGCAGCGTGAGTGACAGCCCCTCGGAGCCCCGGCGGACGGTCAGCGAGAGTGC
GGTTGTGGCCAAGGCACGCTTCCTGCCCTCCAGCGCCCCCCAGCGGGGCAGCGCGGCCCC
GGGCAGGAAGGTGGGCTCGCACTCTGTGGCCAGCTGTGTCCCGCAGCTCCTTGGGGACGG
GCGAGCAAGTGCCGGCCACCCAGATCAGGCCGCTGCCTCTGGCTTGGTGGCAGGCCCAGC
GCGAGCAGCCGCCGGACCGCGGCCGATGCGGGAGCCGTCACTGCTGGTGACCTGTCGAGC
CAGCAAGTTCCGGAAGAACAACTACAAGTGGGTGGCCGCCTCGGCAAAGAGTCCCCGGGC
CCCTCGGAAGGCCCTCAGTCCCAGAGCCGTGGCGGAGAACGTGTGCAAGGCCCCCTTCTC
TGCAGCAGAACGAGCCGAGAAGCCGCACCTCCGAGCTGACCCGGATGCCAAGCCCAGGAG
GGCGGCGGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCAATTACGGCGGCAGATCCGCCTCCTGCAGGGTCTGATCGATGACTACAAAAACCT
CCACGGCCATGTCTCTGCCCCAGGCACCTCTGCGGCTTCCCAGTGGCAGCCGGCCGCTTA
CAACAGCAGCAGGGCCTTCAGTGCTCACGACCCTCGTCCCAGCCGGAGGGGCTTCTCCCC
AAGCCATGGGCCTGCCTGGCGCAAGAAATACTCCCTCGTGAACCGGCCCCTGGGGTCCTC
CTCGGACCTGCCCGGTGACTGTGCCACACAGCCGCCCCTTGGGGCTGGGGGCAGCCAGGG
TCCCACCCCCGAGCAGTACGTCTTGGAGAGGCAGGTCCAGCTCAGTCCAGATCAGAACAT
GGTCATCAAGATAAAACCACCACCCAAGCCAGGCTCGGCCAGTGCTGCAGGGGTCCTGCG
GGGCTCCCTGGACGAACACGAAGGCCCTTCCTGGAGCCCCCACAGGCCTCAGGAGGGTGG
GGGTGAGGCCCCTGGTGGGCAGTGGCAGCCCTCGAGGCCGGGAAGAGCCAAGGGCAGCTG
CGGGGCAGAGGACCCGCTTCCAGTCTGCCGGAGGGCGCCGGGCAAGCTGCGCGTGGTCAA
GTCAATGAGCAGCGTGAGTGACAGCCCCTCGGAGCCCCGGCGGACGGTCAGCGAGAGTGC
GGTTGTGGCCAAGGCACGCTTCCTGCCCTCCAGCGCCCCCCAGCGGGGCAGCGCGGCCCC
GGGCAGGAAGGTGGGCTCGCACTCTGTGGCCAGCTGTGTCCCGCAGCTCCTTGGGGACGG
GCGAGCAAGTGCCGGCCACCCAGATCAGGCCGCTGCCTCTGGCTTGGTGGCAGGCCCAGC
GCGAGCAGCCGCCGGACCGCGGCCGATGCGGGAGCCGTCACTGCTGGTGACCTGTCGAGC
CAGCAAGTTCCGGAAGAACAACTACAAGTGGGTGGCCGCCTCGGCAAAGAGTCCCCGGGC
CCCTCGGAAGGCCCTCAGTCCCAGAGCCGTGGCGGAGAACGTGTGCAAGGCCCCCTTCTC
TGCAGCAGAACGAGCCGAGAAGCCGCACCTCCGAGCTGACCCGGATGCCAAGCCCAGGAG
GGCGGCGGTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               397-596, + strand, RNAz p=0.9952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-596, + strand, RNAz p=0.9952

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               442-538, + strand, RNAmicro p=0.980078

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               442-538, + strand, RNAmicro p=0.980078

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-1090, gnl|bosTau2|chr14 (601476-600466)
               

               
               77-1090, gnl|Hg17|chr8 (144692574-144691582)
               

               
               77-1090, gnl|Mm7|chr15 (75923067-75922070)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-1090, gnl|bosTau2|chr14 (601476-600466)
               

               
               77-1090, gnl|Hg17|chr8 (144692574-144691582)
               

               
               77-1090, gnl|Mm7|chr15 (75923067-75922070)

	77-1090, gnl\|bosTau2\|chr14 (601476-600466)
	77-1090, gnl\|Hg17\|chr8 (144692574-144691582)
	77-1090, gnl\|Mm7\|chr15 (75923067-75922070)