Non-Coding RNA Search

Ss1.1-Mixc-0031m14.3

Sequence:


               
               CCTTGACCAGGAGGGTGGACTGCTCATTCCTGCGTCTGAGAGTGGACCACGTGTGTGTCG
GTCGTGTGGTGACATGGCCCAGGGCAATAATTATGGGCAGACCAGCAATGGGGTGGCAGA
TGAGTCACCCAACATGCTGGTGTACAGAAAGATGGAAGACGTCATAGCCCGCATGCAAGA
TGAAAAAAATGGAATTCCTATTCGTACTGTCAAAAGCTTCCTTTCCAAGATACCTAGTGT
CTTCTCTGGGTCAGACATTGTTCAGTGGTTAATAAAGAACTTAACCATAGAAGATCCAGT
GGAGGCGCTCCATTTGGGAACACTGATGTCTGCCCACGGCTACTTCTTTCCGATCTCAGA
CCACGTCCTCACGCTCAAGGATGATGGCACCTTTTACCGATTTCAAACACCCTATTTTTG
GCCATCAAATTGTTGGGAGCCAGAAAACACAGACTACGCGGTTTACCTCTGTAAGAGAAC
AATGCAAAACAAGGCAAGGCTGGAGCTAGCTGACTATGAAGCTGAGAGCTTGGCCAGGCT
GCAGAGGGCATTTGCCCGGAAGTGGGAGTTCATTTTTATGCAAGCAGAGGCACAAGCGAA
AGTGGACAAGAAGAGAGACAAGATTGAAAGAAAGATCCTCGATAGTCAAGAGAGAGCATT
CTGGGACGTCCACAGGCCGGTGCCTGGATGTGTAAATACCACAGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGACCAGGAGGGTGGACTGCTCATTCCTGCGTCTGAGAGTGGACCACGTGTGTGTCG
GTCGTGTGGTGACATGGCCCAGGGCAATAATTATGGGCAGACCAGCAATGGGGTGGCAGA
TGAGTCACCCAACATGCTGGTGTACAGAAAGATGGAAGACGTCATAGCCCGCATGCAAGA
TGAAAAAAATGGAATTCCTATTCGTACTGTCAAAAGCTTCCTTTCCAAGATACCTAGTGT
CTTCTCTGGGTCAGACATTGTTCAGTGGTTAATAAAGAACTTAACCATAGAAGATCCAGT
GGAGGCGCTCCATTTGGGAACACTGATGTCTGCCCACGGCTACTTCTTTCCGATCTCAGA
CCACGTCCTCACGCTCAAGGATGATGGCACCTTTTACCGATTTCAAACACCCTATTTTTG
GCCATCAAATTGTTGGGAGCCAGAAAACACAGACTACGCGGTTTACCTCTGTAAGAGAAC
AATGCAAAACAAGGCAAGGCTGGAGCTAGCTGACTATGAAGCTGAGAGCTTGGCCAGGCT
GCAGAGGGCATTTGCCCGGAAGTGGGAGTTCATTTTTATGCAAGCAGAGGCACAAGCGAA
AGTGGACAAGAAGAGAGACAAGATTGAAAGAAAGATCCTCGATAGTCAAGAGAGAGCATT
CTGGGACGTCCACAGGCCGGTGCCTGGATGTGTAAATACCACAGAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19908840|gb|AAM03013.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19908840|gb|AAM03013.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-151, + strand, RNAz p=0.973691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-151, + strand, RNAz p=0.973691

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002924, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002924, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-151, gnl|bosTau2|chr16 (16123154-16123285)
               

               
               12-151, gnl|Hg17|chr1 (237845169-237845040)
               

               
               12-151, gnl|Mm7|chr1 (175457461-175457336)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-151, gnl|bosTau2|chr16 (16123154-16123285)
               

               
               12-151, gnl|Hg17|chr1 (237845169-237845040)
               

               
               12-151, gnl|Mm7|chr1 (175457461-175457336)

	12-151, gnl\|bosTau2\|chr16 (16123154-16123285)
	12-151, gnl\|Hg17\|chr1 (237845169-237845040)
	12-151, gnl\|Mm7\|chr1 (175457461-175457336)