Non-Coding RNA Search

Ss1.1-Mixc-0031n05.5

Sequence:


               
               GCTCTGGTCGGCCAATCCCACCAAGAAAGGGCTGGAGGGGGAAAGAGACAGCGAGGAGGT
TCTGAGCCCAGCAAGGGTGGAGAAGATAAGATGCGAGGGAGAACAAATGGATTCAGAGGG
GATGCGGAGAGGTGTTTTTCTGCCACCTGTGCCAGGTCCCCAGGGAAGCTGCCAGAAGGG
GAGCACTGCTCCCTTGCCTGGCTGGGTCTCTGTAACTTAGCTTCTTTTGACAGGCATGGC
CATTTCGGTGTTGGTGGTCCTGCTCCTGGCTGTGTTGTATGAAAGCCTCAAGGTTGGCAA
AGCCAGGCTGCTCCTCCAGGCCTTGATGAGCCTGTCCACACCCACCAGGCAGCAGCTCAT
CGAAGAGACAGACCAGGATTCAAGTTCAGACTCACTCCCAGACAGCAGGACCCATCTCAC
GTGGTTCATGTGTCACTTTGGCCAGTCTTTACTCCACGTCGCTCAGGTGGTCATTGGCTA
CTTCATGATGCTGGCTGTGATGTCCTACAACACGTGGATTTTCTTTGGCGTGGTCCTGGG
CTCACGTGTGGGCTACTACCTGGCCTACCCACTTCTCAACATGACTTAGCTCGTGAGGGC
TGTGCAGGAACTAANGGCTGGAGAGAGCAGGGGCCCCTTCCCCCAACATTTATCTTCCAG
CCTCATGTCTTCTGTCTCTTCTGCTGGCTAGTCTCACACCATTCTCAGCTCCTGAAAACT
TTCAGCTGAAGCCAGCGCATGCTCCCTGGAGTTCAGAAGCCATTGCGGCTCCTCAGCCGG
CCTGTAGAGAGCTCACGCATAGTCAGTCTGTGCCTCTAAAAAGCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGGTCGGCCAATCCCACCAAGAAAGGGCTGGAGGGGGAAAGAGACAGCGAGGAGGT
TCTGAGCCCAGCAAGGGTGGAGAAGATAAGATGCGAGGGAGAACAAATGGATTCAGAGGG
GATGCGGAGAGGTGTTTTTCTGCCACCTGTGCCAGGTCCCCAGGGAAGCTGCCAGAAGGG
GAGCACTGCTCCCTTGCCTGGCTGGGTCTCTGTAACTTAGCTTCTTTTGACAGGCATGGC
CATTTCGGTGTTGGTGGTCCTGCTCCTGGCTGTGTTGTATGAAAGCCTCAAGGTTGGCAA
AGCCAGGCTGCTCCTCCAGGCCTTGATGAGCCTGTCCACACCCACCAGGCAGCAGCTCAT
CGAAGAGACAGACCAGGATTCAAGTTCAGACTCACTCCCAGACAGCAGGACCCATCTCAC
GTGGTTCATGTGTCACTTTGGCCAGTCTTTACTCCACGTCGCTCAGGTGGTCATTGGCTA
CTTCATGATGCTGGCTGTGATGTCCTACAACACGTGGATTTTCTTTGGCGTGGTCCTGGG
CTCACGTGTGGGCTACTACCTGGCCTACCCACTTCTCAACATGACTTAGCTCGTGAGGGC
TGTGCAGGAACTAANGGCTGGAGAGAGCAGGGGCCCCTTCCCCCAACATTTATCTTCCAG
CCTCATGTCTTCTGTCTCTTCTGCTGGCTAGTCTCACACCATTCTCAGCTCCTGAAAACT
TTCAGCTGAAGCCAGCGCATGCTCCCTGGAGTTCAGAAGCCATTGCGGCTCCTCAGCCGG
CCTGTAGAGAGCTCACGCATAGTCAGTCTGTGCCTCTAAAAAGCTGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q53X94_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q53X94_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               452-571, - strand, RNAz p=0.780885
               

               
               651-768, - strand, RNAz p=0.51227

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               452-571, - strand, RNAz p=0.780885
               

               
               651-768, - strand, RNAz p=0.51227

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               413-828, gnl|bosTau2|chr8 (53101534-53101120)
               

               
               413-828, gnl|Hg17|chr9 (113004576-113004989)
               

               
               413-828, gnl|Mm7|chr4 (61730664-61731069)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               413-828, gnl|bosTau2|chr8 (53101534-53101120)
               

               
               413-828, gnl|Hg17|chr9 (113004576-113004989)
               

               
               413-828, gnl|Mm7|chr4 (61730664-61731069)

	452-571, - strand, RNAz p=0.780885
	651-768, - strand, RNAz p=0.51227

	413-828, gnl\|bosTau2\|chr8 (53101534-53101120)
	413-828, gnl\|Hg17\|chr9 (113004576-113004989)
	413-828, gnl\|Mm7\|chr4 (61730664-61731069)