Ss1.1-Mixc-0031n18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTTAATGGACACCAGGACGGCTACTGCAGAGCTGGGCTGGACTGCCAATCCTGCATCA GGGTGGGAAGAAGTCAGTGGCTACGATGAAAACCTGAACACCATCCGCACCTACCAGGTG TGCAATGTCTTCGAGCCCAACCAGAACAACTGGCTGCTCACCACCTTCATCAACCGGCGG GGGGCCCATCGCATCTACACGGAGATGCGCTTCACTGTGAGAGACTGCAGCAGCCTCCCC AACGTCCCAGGCTCCTGCAAGGAGACCTTCAACCTGTACTACTATGAGACTGACTCCGTC ATTGCCACCAAGAAGTCGGCCTTCTGGTCCGAGGCCCCCTACCTCAAAGTGGACACCATT GCTGCAGACGAGAGCTTCTCCCAAGTGGACTTTGGGGGAAGGTTGATGAAGGTCAACACA GAAGTCAGGAGCTTTGGACCTCTCACGCGGAATGGTTTTTACCTCGCCTTCCAGGATTAT GGAGCCTGTATGTCTCTCCTGTCTGTCCGTGTCTTCTTCAAAAAGTGTCCCAGCATTGTG CAAAATTTTGCGGTGTTCCCAGAGACCATGACTGGGGCAGAGAGCACATCTCTGGTGATT GCTCGGGGCACATGCATCCCCAATGCAGAGGAAGTGGACGTGCCCATCAAACTCTACTGC AACGGGGATGGGGAGTGGATGGTGCCCATCGGGCGCTGCACCTGCAAGCCTGGCTATGAG CCCGAGAACAGCGTGGCCTGCAAGGCCTGCCCTGCAGGGATGTTCAAGGCCAGCCAAGAA GCTGAGGGCTGTTCCCACTGCCCCTCCAACAGCCGATCCCCTTCGGAGGCATCTCCCATC TGCACCTGCCGGACTGGCTATTACCGAGCGGATTTTGACCCCCCGGACGTGGCATGCACT AGTGTCCCCTCCGGCCCCCGAAACGTCATCTCCATCGTCAACGAGACATCCATCATTCTG GAGTGGCACCCTCCTCGGGAGACCGGTGGGAGGGATGATGTGACCTACAACATCATCTGT AAAAAGTGCCGGGCGGACCGCCGGAGCTGCTCCCGCTGCGACGACAATGTGGAGTTTGTG CCCAGGCAGCTAGGCCTGACCGAGTGCCGCGTCTCCATCAGCAGCCTGTGGGCCCACACC CCTACACCTTCGACATCCAGGCCGTCAATGGGGTGTCCAGCAAGAGTCCCTTCCCCCCGC AGCACGTCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTTAATGGACACCAGGACGGCTACTGCAGAGCTGGGCTGGACTGCCAATCCTGCATCA GGGTGGGAAGAAGTCAGTGGCTACGATGAAAACCTGAACACCATCCGCACCTACCAGGTG TGCAATGTCTTCGAGCCCAACCAGAACAACTGGCTGCTCACCACCTTCATCAACCGGCGG GGGGCCCATCGCATCTACACGGAGATGCGCTTCACTGTGAGAGACTGCAGCAGCCTCCCC AACGTCCCAGGCTCCTGCAAGGAGACCTTCAACCTGTACTACTATGAGACTGACTCCGTC ATTGCCACCAAGAAGTCGGCCTTCTGGTCCGAGGCCCCCTACCTCAAAGTGGACACCATT GCTGCAGACGAGAGCTTCTCCCAAGTGGACTTTGGGGGAAGGTTGATGAAGGTCAACACA GAAGTCAGGAGCTTTGGACCTCTCACGCGGAATGGTTTTTACCTCGCCTTCCAGGATTAT GGAGCCTGTATGTCTCTCCTGTCTGTCCGTGTCTTCTTCAAAAAGTGTCCCAGCATTGTG CAAAATTTTGCGGTGTTCCCAGAGACCATGACTGGGGCAGAGAGCACATCTCTGGTGATT GCTCGGGGCACATGCATCCCCAATGCAGAGGAAGTGGACGTGCCCATCAAACTCTACTGC AACGGGGATGGGGAGTGGATGGTGCCCATCGGGCGCTGCACCTGCAAGCCTGGCTATGAG CCCGAGAACAGCGTGGCCTGCAAGGCCTGCCCTGCAGGGATGTTCAAGGCCAGCCAAGAA GCTGAGGGCTGTTCCCACTGCCCCTCCAACAGCCGATCCCCTTCGGAGGCATCTCCCATC TGCACCTGCCGGACTGGCTATTACCGAGCGGATTTTGACCCCCCGGACGTGGCATGCACT AGTGTCCCCTCCGGCCCCCGAAACGTCATCTCCATCGTCAACGAGACATCCATCATTCTG GAGTGGCACCCTCCTCGGGAGACCGGTGGGAGGGATGATGTGACCTACAACATCATCTGT AAAAAGTGCCGGGCGGACCGCCGGAGCTGCTCCCGCTGCGACGACAATGTGGAGTTTGTG CCCAGGCAGCTAGGCCTGACCGAGTGCCGCGTCTCCATCAGCAGCCTGTGGGCCCACACC CCTACACCTTCGACATCCAGGCCGTCAATGGGGTGTCCAGCAAGAGTCCCTTCCCCCCGC AGCACGTCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 542-701, + strand, RNAz p=0.991402 | |
| 902-1020, - strand, RNAz p=0.745693 | |
| 1096-1212, - strand, RNAz p=0.602318 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 542-701, + strand, RNAz p=0.991402 | |
| 902-1020, - strand, RNAz p=0.745693 | |
| 1096-1212, - strand, RNAz p=0.602318 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 63-745, gnl|bosTau2|chr1 (87105396-87104714) | |
| 63-745, gnl|Hg17|chr3 (136152910-136153592) | |
| 63-745, gnl|Mm7|chr9 (101886788-101886106) | |
| 902-1212, gnl|bosTau2|chr1 (86930694-86930383) | |
| 902-1212, gnl|canFam2|chr23 (34854104-34854402) | |
| 902-1212, gnl|danRer3|chr23 (29422882-29422608) | |
| 902-1212, gnl|dasNov1|scaffold_10849 (84518-84223) | |
| 902-1212, gnl|echTel1|scaffold_217660 (6837-7123) | |
| 902-1212, gnl|fr1|chrUn (198589963-198589676) | |
| 902-1212, gnl|galGal2|chr9 (9857853-9857565) | |
| 902-1212, gnl|hg17|chr3 (136334217-136334514) | |
| 902-1212, gnl|Hg17|chr3 (136334254-136334565) | |
| 902-1212, gnl|loxAfr1|scaffold_63829 (13859-13561) | |
| 902-1212, gnl|mm7|chr9 (101732719-101732422) | |
| 902-1212, gnl|Mm7|chr9 (101732680-101732369) | |
| 902-1212, gnl|monDom2|scaffold_24 (29356591-29356893) | |
| 902-1212, gnl|oryCun1|scaffold_205414 (108023-107725) | |
| 902-1212, gnl|panTro1|chr2 (138533198-138533495) | |
| 902-1212, gnl|rheMac2|chr2 (152629141-152628843) | |
| 902-1212, gnl|rn3|chr8 (107017412-107017114) | |
| 902-1212, gnl|tetNig1|chr15 (5416496-5416211) | |
| 902-1212, gnl|xenTro1|scaffold_361 (937493-937197) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 63-745, gnl|bosTau2|chr1 (87105396-87104714) | |
| 63-745, gnl|Hg17|chr3 (136152910-136153592) | |
| 63-745, gnl|Mm7|chr9 (101886788-101886106) | |
| 902-1212, gnl|bosTau2|chr1 (86930694-86930383) | |
| 902-1212, gnl|canFam2|chr23 (34854104-34854402) | |
| 902-1212, gnl|danRer3|chr23 (29422882-29422608) | |
| 902-1212, gnl|dasNov1|scaffold_10849 (84518-84223) | |
| 902-1212, gnl|echTel1|scaffold_217660 (6837-7123) | |
| 902-1212, gnl|fr1|chrUn (198589963-198589676) | |
| 902-1212, gnl|galGal2|chr9 (9857853-9857565) | |
| 902-1212, gnl|hg17|chr3 (136334217-136334514) | |
| 902-1212, gnl|Hg17|chr3 (136334254-136334565) | |
| 902-1212, gnl|loxAfr1|scaffold_63829 (13859-13561) | |
| 902-1212, gnl|mm7|chr9 (101732719-101732422) | |
| 902-1212, gnl|Mm7|chr9 (101732680-101732369) | |
| 902-1212, gnl|monDom2|scaffold_24 (29356591-29356893) | |
| 902-1212, gnl|oryCun1|scaffold_205414 (108023-107725) | |
| 902-1212, gnl|panTro1|chr2 (138533198-138533495) | |
| 902-1212, gnl|rheMac2|chr2 (152629141-152628843) | |
| 902-1212, gnl|rn3|chr8 (107017412-107017114) | |
| 902-1212, gnl|tetNig1|chr15 (5416496-5416211) | |
| 902-1212, gnl|xenTro1|scaffold_361 (937493-937197) |