Non-Coding RNA Search

Ss1.1-Mixc-0032,b05.5

Sequence:


               
               AAACTTAACTGTCCATATAAAAGTTAGAACTGAAGCCCTTAATTCAAGAAAAGAAGGAAG
GGGAAGGAGGAGGGAGGAAAATGGCACTGGGTGTAGAGGATCTGCAGGTGTCTGCCCTCC
TCTGAATGGTGGATGCAACAAATTCAACCTTAAAGTAAAAGCATGGATATGTTTTTAATT
TATTTGTGAGGAGTTAAATTTCTGAGACACTGCAACCATTGAAACAGCAAAGCTACCAAG
TAATTATAATTCTGAGATTTCCTGGAAGTGGAAAATCTATGTATGCTGCCTAAAGTGACA
GTGCTTTTGCTACTCAGGTAAGATTTTTAAGGAATTTCCTCTGTGTTCTGATGTCTATTT
TCACCTTCCCCCACACCCCCTACAAAAAAAAGATTGGGCGTCATTGTTCTGTCTCTGTTG
GGGGCTGCAAATGGAAGCTCTGGAGGGAGGAAGGGTTGCCTTGGTTTACAACTGAGAGCA
AAAGGTACCACCTGAGTGTCTTCCGAGAGAAGCTTCCTTTAGATTAATGTATATCCTCAA
TCAGCTTAACTAAGCAGGTAAGGTGTTCATTAGCTAGGCTGGATTTTCAAAGGGGGGTGG
GTGGGTAGAGAGAACGAATGTAGAAGAGTGAGAAGAACAAACAAGTCAAAGCATTTGTTC
ATGCTGCAATCTACACATCAATTATCCCGCTGTGCTAATTACCACCTTTCCATACCCCAG
GTACCTAAGCATTCACACTTACTCACTCTTTCATGCCTCTGATCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTAACTGTCCATATAAAAGTTAGAACTGAAGCCCTTAATTCAAGAAAAGAAGGAAG
GGGAAGGAGGAGGGAGGAAAATGGCACTGGGTGTAGAGGATCTGCAGGTGTCTGCCCTCC
TCTGAATGGTGGATGCAACAAATTCAACCTTAAAGTAAAAGCATGGATATGTTTTTAATT
TATTTGTGAGGAGTTAAATTTCTGAGACACTGCAACCATTGAAACAGCAAAGCTACCAAG
TAATTATAATTCTGAGATTTCCTGGAAGTGGAAAATCTATGTATGCTGCCTAAAGTGACA
GTGCTTTTGCTACTCAGGTAAGATTTTTAAGGAATTTCCTCTGTGTTCTGATGTCTATTT
TCACCTTCCCCCACACCCCCTACAAAAAAAAGATTGGGCGTCATTGTTCTGTCTCTGTTG
GGGGCTGCAAATGGAAGCTCTGGAGGGAGGAAGGGTTGCCTTGGTTTACAACTGAGAGCA
AAAGGTACCACCTGAGTGTCTTCCGAGAGAAGCTTCCTTTAGATTAATGTATATCCTCAA
TCAGCTTAACTAAGCAGGTAAGGTGTTCATTAGCTAGGCTGGATTTTCAAAGGGGGGTGG
GTGGGTAGAGAGAACGAATGTAGAAGAGTGAGAAGAACAAACAAGTCAAAGCATTTGTTC
ATGCTGCAATCTACACATCAATTATCCCGCTGTGCTAATTACCACCTTTCCATACCCCAG
GTACCTAAGCATTCACACTTACTCACTCTTTCATGCCTCTGATCAGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               393-541, - strand, RNAz p=0.998177
               

               
               630-768, - strand, RNAz p=0.918917

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               393-541, - strand, RNAz p=0.998177
               

               
               630-768, - strand, RNAz p=0.918917

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-768, gnl|bosTau2|chr2 (35560291-35559535)
               

               
               6-768, gnl|Hg17|chr2 (145037412-145036583)
               

               
               6-768, gnl|Mm7|chr2 (45047124-45045815)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-768, gnl|bosTau2|chr2 (35560291-35559535)
               

               
               6-768, gnl|Hg17|chr2 (145037412-145036583)
               

               
               6-768, gnl|Mm7|chr2 (45047124-45045815)

	393-541, - strand, RNAz p=0.998177
	630-768, - strand, RNAz p=0.918917

	6-768, gnl\|bosTau2\|chr2 (35560291-35559535)
	6-768, gnl\|Hg17\|chr2 (145037412-145036583)
	6-768, gnl\|Mm7\|chr2 (45047124-45045815)