Non-Coding RNA Search

Ss1.1-Mixc-0032,c11.3

Sequence:


               
               GAACAGAGGCTGCCAGGTCAGGCTGTCCATAGGAACTGAGTCCAGTACTCTGGGGTGCTG
GCCTGGATCCATTAAAAATGGAGCACTGATGAAATANAGCTATGTGTCAACAATACACAT
GCCCCAACACAGCTTTTCTCTGTTTACAAGGTCTGGGGTTAGGACCTTTAGAGAAGGCAG
GGAGGAAGGAGAGAGAGGCAGAGATAGACTTCATACACATTTGCATGGCTGGAATTATAT
GAAAACCTCAGACTTGAGAGTTTTGGCTGGAAATATTGTCTTCACGGCCAAAATCCACTG
GATAATTGCCAGTAGTTCTTGCTCTGCTGTGCAGATACTGTAAAAAGGTGAGAAGTAAAG
CCTCTGCAATCTGACTTGAGGCCTCTTGAGAAAGCTGCTGTGAACACCTCCACATTTATG
TCAACCCTCAATTGCTCTACCCGCTTCTTTAGGGGATGAGAAGGGCAAGGAGCTTATTTC
CTTGCTCCTTTAGGGGTCTATTCCAGACAGGTCCCCATAACCCGCGAGGTCTCCAAGTCC
TTCATCCTCCTCACTCTGGCTGAAGCTGAATATGGGAGCCCAGAGGAGCCCAGAGGCTGC
CCCCTGACCTGACAGTTCCAGGCTGGTAAATGAGAGGAGGGGATGAATTAAATTTGCTTT
TTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGCCTTTAAA
AAATTTCCCGGGGGGGGCCCAATTTCCCCCCCCCCCTTTTTTTTTAAAAAAGGGGGCCCT
TTAGGGGGGGTTTTTAAAAAGGGGGGGCGGGGGCGGTTTTAAAAACGGGGGGGGGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAGAGGCTGCCAGGTCAGGCTGTCCATAGGAACTGAGTCCAGTACTCTGGGGTGCTG
GCCTGGATCCATTAAAAATGGAGCACTGATGAAATANAGCTATGTGTCAACAATACACAT
GCCCCAACACAGCTTTTCTCTGTTTACAAGGTCTGGGGTTAGGACCTTTAGAGAAGGCAG
GGAGGAAGGAGAGAGAGGCAGAGATAGACTTCATACACATTTGCATGGCTGGAATTATAT
GAAAACCTCAGACTTGAGAGTTTTGGCTGGAAATATTGTCTTCACGGCCAAAATCCACTG
GATAATTGCCAGTAGTTCTTGCTCTGCTGTGCAGATACTGTAAAAAGGTGAGAAGTAAAG
CCTCTGCAATCTGACTTGAGGCCTCTTGAGAAAGCTGCTGTGAACACCTCCACATTTATG
TCAACCCTCAATTGCTCTACCCGCTTCTTTAGGGGATGAGAAGGGCAAGGAGCTTATTTC
CTTGCTCCTTTAGGGGTCTATTCCAGACAGGTCCCCATAACCCGCGAGGTCTCCAAGTCC
TTCATCCTCCTCACTCTGGCTGAAGCTGAATATGGGAGCCCAGAGGAGCCCAGAGGCTGC
CCCCTGACCTGACAGTTCCAGGCTGGTAAATGAGAGGAGGGGATGAATTAAATTTGCTTT
TTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGCCTTTAAA
AAATTTCCCGGGGGGGGCCCAATTTCCCCCCCCCCCTTTTTTTTTAAAAAAGGGGGCCCT
TTAGGGGGGGTTTTTAAAAAGGGGGGGCGGGGGCGGTTTTAAAAACGGGGGGGGGGGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               203-361, + strand, RNAz p=0.943368

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-361, + strand, RNAz p=0.943368

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               70-669, gnl|bosTau2|chr19 (27908491-27909090)
               

               
               70-669, gnl|Hg17|chr17 (46123996-46124608)
               

               
               70-669, gnl|Mm7|chr11 (94452379-94451836)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-669, gnl|bosTau2|chr19 (27908491-27909090)
               

               
               70-669, gnl|Hg17|chr17 (46123996-46124608)
               

               
               70-669, gnl|Mm7|chr11 (94452379-94451836)

	70-669, gnl\|bosTau2\|chr19 (27908491-27909090)
	70-669, gnl\|Hg17\|chr17 (46123996-46124608)
	70-669, gnl\|Mm7\|chr11 (94452379-94451836)