Ss1.1-Mixc-0032a12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGGCTCTGCTGAAGGCCATCGTGCAGGGACAGGGGGACCGCTTGGGCATCCTCAGGG CCCTCTTCTTTAAGGCCATCAAGGATTACCCCTCTCACGAAGACCTCCACGAGAGGCTGG AGGTTTTCAAGGCGCTCACGGACAACGGGAGGCACATCAACTACTTGGAAGAAGACCTGG CCGAGTTTGTCCTGCAGTGGATGGACGTCGGCCTGACCTCCGAGTTCCTTCTGGTGCTCG TGAACTTGGTGAAGTTCAACAGCTGTTACCTTGACGAGTACATCGCATCCATGGTCCACA TGATCTGCCTGCTCTGCGTCCAGACCGTGTCCTCCGTGGACATAGAGGTCTCTCTGCAGG TGCTGGACGCTGTGGTCTGCTACAACTGCCTGCCGGCGGAGAGCCTCCCCCTCTTCATTG TCACACTTTGCCGCACCATCAACGTCAAGGAGCTCTGCGAGCCGTGCTGGAAGCTGATGC GTAATCTCCTGGGCACCCACCTGGGCCACAGCGCCATCTACCACATGTGCCGCCTCATGG AGGACAGGCAAGTGCGGCGGCGGGCACCCGGGGAGCCCAGGGGGTGGTCGGTGGCCACGA GTGGCGTCGAGGAGGGTCAGTGTGTGGGCTCTTGCCCAGCTCGGGCTGCCCGGGTGCTCC CTCCGTGGGGCTAGGCCATGACCTGTCCGAACGAGGTGGTGTCCTACGAGATCGTCCTGT CCATAACCCGACTCATCAAGAAGTACCGGCGGGAGCTCCAGGCCGTGACCTGGGACGTCC TGCTGAACATCATTGAACGCCTGCTCCAGCAGTTCCAGAGCCTGGACAGTCCGGAACTCA CAGCCATCGTCCACGACCTGCTGACCACAGTGGAGGAGCTGTGTGATCAGAACGAGTTCC ATGGCTCTCAGGAGAGATACTTCGAGCTCGTTGAGAGATATGCGGACCAGAGGCCTGAGT CCTCACTCCTAAATTTAATAACCTACAGGGCCCAGTCCATCCATCCGGCCAAGGATGGCT GGATTCACAACCTGCAGCTGCTGATGGAGCGATTCTTCAGGAATGAGGCGCGCAGCGCTG TGCGGATCAAGGTACTGGACGTCCTGTCCTTCGTGTTGCTCATCAACAAACAGTTCTACG AGGAGGAGCTCATCAACTCGGTGATCATCTCACAGCTCTGCACATCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGGCTCTGCTGAAGGCCATCGTGCAGGGACAGGGGGACCGCTTGGGCATCCTCAGGG CCCTCTTCTTTAAGGCCATCAAGGATTACCCCTCTCACGAAGACCTCCACGAGAGGCTGG AGGTTTTCAAGGCGCTCACGGACAACGGGAGGCACATCAACTACTTGGAAGAAGACCTGG CCGAGTTTGTCCTGCAGTGGATGGACGTCGGCCTGACCTCCGAGTTCCTTCTGGTGCTCG TGAACTTGGTGAAGTTCAACAGCTGTTACCTTGACGAGTACATCGCATCCATGGTCCACA TGATCTGCCTGCTCTGCGTCCAGACCGTGTCCTCCGTGGACATAGAGGTCTCTCTGCAGG TGCTGGACGCTGTGGTCTGCTACAACTGCCTGCCGGCGGAGAGCCTCCCCCTCTTCATTG TCACACTTTGCCGCACCATCAACGTCAAGGAGCTCTGCGAGCCGTGCTGGAAGCTGATGC GTAATCTCCTGGGCACCCACCTGGGCCACAGCGCCATCTACCACATGTGCCGCCTCATGG AGGACAGGCAAGTGCGGCGGCGGGCACCCGGGGAGCCCAGGGGGTGGTCGGTGGCCACGA GTGGCGTCGAGGAGGGTCAGTGTGTGGGCTCTTGCCCAGCTCGGGCTGCCCGGGTGCTCC CTCCGTGGGGCTAGGCCATGACCTGTCCGAACGAGGTGGTGTCCTACGAGATCGTCCTGT CCATAACCCGACTCATCAAGAAGTACCGGCGGGAGCTCCAGGCCGTGACCTGGGACGTCC TGCTGAACATCATTGAACGCCTGCTCCAGCAGTTCCAGAGCCTGGACAGTCCGGAACTCA CAGCCATCGTCCACGACCTGCTGACCACAGTGGAGGAGCTGTGTGATCAGAACGAGTTCC ATGGCTCTCAGGAGAGATACTTCGAGCTCGTTGAGAGATATGCGGACCAGAGGCCTGAGT CCTCACTCCTAAATTTAATAACCTACAGGGCCCAGTCCATCCATCCGGCCAAGGATGGCT GGATTCACAACCTGCAGCTGCTGATGGAGCGATTCTTCAGGAATGAGGCGCGCAGCGCTG TGCGGATCAAGGTACTGGACGTCCTGTCCTTCGTGTTGCTCATCAACAAACAGTTCTACG AGGAGGAGCTCATCAACTCGGTGATCATCTCACAGCTCTGCACATCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 63-180, + strand, RNAz p=0.91088 | |
| 64-180, - strand, RNAz p=0.992052 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 63-180, + strand, RNAz p=0.91088 | |
| 64-180, - strand, RNAz p=0.992052 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 33-180, gnl|bosTau2|chr25 (2781623-2781770) | |
| 33-180, gnl|canFam2|chr6 (41936358-41936243) | |
| 33-180, gnl|dasNov1|scaffold_143071 (494-375) | |
| 33-180, gnl|fr1|chrUn (217940674-217940563) | |
| 33-180, gnl|galGal2|chr14 (8310833-8310946) | |
| 33-180, gnl|hg17|chr16 (2044281-2044400) | |
| 33-180, gnl|Hg17|chr16 (2044295-2044442) | |
| 33-180, gnl|loxAfr1|scaffold_145299 (1407-1293) | |
| 33-180, gnl|mm7|chr17 (22809930-22809811) | |
| 33-180, gnl|Mm7|chr17 (22809914-22809767) | |
| 33-180, gnl|monDom2|scaffold_5 (121237628-121237505) | |
| 33-180, gnl|panTro1|chr18_random (6564118-6563999) | |
| 33-180, gnl|rheMac2|chr20 (2045089-2045208) | |
| 33-180, gnl|rn3|chr10 (13878433-13878314) | |
| 33-180, gnl|tetNig1|chr18 (2028429-2028315) | |
| 33-180, gnl|xenTro1|scaffold_12 (1063133-1063249) | |
| 346-506, gnl|bosTau2|chr25 (2783552-2783709) | |
| 346-506, gnl|canFam2|chr6 (41934295-41934146) | |
| 346-506, gnl|danRer3|chrNA (220241397-220241268) | |
| 346-506, gnl|echTel1|scaffold_233295 (4169-4311) | |
| 346-506, gnl|fr1|chrUn (217939322-217939188) | |
| 346-506, gnl|galGal2|chr14 (8312116-8312266) | |
| 346-506, gnl|hg17|chr16 (2046627-2046777) | |
| 346-506, gnl|Hg17|chr16 (2046644-2046787) | |
| 346-506, gnl|loxAfr1|scaffold_23244 (29794-29939) | |
| 346-506, gnl|mm7|chr17 (22807213-22807067) | |
| 346-506, gnl|Mm7|chr17 (22807198-22807041) | |
| 346-506, gnl|monDom2|scaffold_5 (121226022-121225877) | |
| 346-506, gnl|oryCun1|scaffold_141687 (1255-1401) | |
| 346-506, gnl|panTro1|chr18_random (6561772-6561627) | |
| 346-506, gnl|rheMac2|chr20 (2047383-2047533) | |
| 346-506, gnl|rn3|chr10 (13875708-13875562) | |
| 346-506, gnl|tetNig1|chr18 (2027689-2027555) | |
| 346-506, gnl|xenTro1|scaffold_12 (1065533-1065663) | |
| 673-818, gnl|bosTau2|chr25 (2785943-2786088) | |
| 673-818, gnl|canFam2|chr6 (41931578-41931420) | |
| 673-818, gnl|danRer3|chrNA (220240137-220239989) | |
| 673-818, gnl|echTel1|scaffold_233295 (6559-6715) | |
| 673-818, gnl|fr1|chrUn (217938572-217938425) | |
| 673-818, gnl|galGal2|chr14 (8313752-8313911) | |
| 673-818, gnl|hg17|chr16 (2050662-2050821) | |
| 673-818, gnl|Hg17|chr16 (2050670-2050815) | |
| 673-818, gnl|loxAfr1|scaffold_23244 (34197-34356) | |
| 673-818, gnl|mm7|chr17 (22803507-22803346) | |
| 673-818, gnl|Mm7|chr17 (22803495-22803350) | |
| 673-818, gnl|monDom2|scaffold_5 (121220781-121220622) | |
| 673-818, gnl|oryCun1|scaffold_141687 (4100-4259) | |
| 673-818, gnl|panTro1|chr18_random (8353487-8353328) | |
| 673-818, gnl|rheMac2|chr20 (2050947-2051106) | |
| 673-818, gnl|rn3|chr10 (13872384-13872225) | |
| 673-818, gnl|tetNig1|chr18 (2026991-2026841) | |
| 673-818, gnl|xenTro1|scaffold_12 (1066966-1067114) | |
| 957-1061, gnl|bosTau2|chr25 (2787534-2787638) | |
| 957-1061, gnl|Hg17|chr16 (2052499-2052603) | |
| 957-1061, gnl|Mm7|chr17 (22801988-22801884) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-180, gnl|bosTau2|chr25 (2781623-2781770) | |
| 33-180, gnl|canFam2|chr6 (41936358-41936243) | |
| 33-180, gnl|dasNov1|scaffold_143071 (494-375) | |
| 33-180, gnl|fr1|chrUn (217940674-217940563) | |
| 33-180, gnl|galGal2|chr14 (8310833-8310946) | |
| 33-180, gnl|hg17|chr16 (2044281-2044400) | |
| 33-180, gnl|Hg17|chr16 (2044295-2044442) | |
| 33-180, gnl|loxAfr1|scaffold_145299 (1407-1293) | |
| 33-180, gnl|mm7|chr17 (22809930-22809811) | |
| 33-180, gnl|Mm7|chr17 (22809914-22809767) | |
| 33-180, gnl|monDom2|scaffold_5 (121237628-121237505) | |
| 33-180, gnl|panTro1|chr18_random (6564118-6563999) | |
| 33-180, gnl|rheMac2|chr20 (2045089-2045208) | |
| 33-180, gnl|rn3|chr10 (13878433-13878314) | |
| 33-180, gnl|tetNig1|chr18 (2028429-2028315) | |
| 33-180, gnl|xenTro1|scaffold_12 (1063133-1063249) | |
| 346-506, gnl|bosTau2|chr25 (2783552-2783709) | |
| 346-506, gnl|canFam2|chr6 (41934295-41934146) | |
| 346-506, gnl|danRer3|chrNA (220241397-220241268) | |
| 346-506, gnl|echTel1|scaffold_233295 (4169-4311) | |
| 346-506, gnl|fr1|chrUn (217939322-217939188) | |
| 346-506, gnl|galGal2|chr14 (8312116-8312266) | |
| 346-506, gnl|hg17|chr16 (2046627-2046777) | |
| 346-506, gnl|Hg17|chr16 (2046644-2046787) | |
| 346-506, gnl|loxAfr1|scaffold_23244 (29794-29939) | |
| 346-506, gnl|mm7|chr17 (22807213-22807067) | |
| 346-506, gnl|Mm7|chr17 (22807198-22807041) | |
| 346-506, gnl|monDom2|scaffold_5 (121226022-121225877) | |
| 346-506, gnl|oryCun1|scaffold_141687 (1255-1401) | |
| 346-506, gnl|panTro1|chr18_random (6561772-6561627) | |
| 346-506, gnl|rheMac2|chr20 (2047383-2047533) | |
| 346-506, gnl|rn3|chr10 (13875708-13875562) | |
| 346-506, gnl|tetNig1|chr18 (2027689-2027555) | |
| 346-506, gnl|xenTro1|scaffold_12 (1065533-1065663) | |
| 673-818, gnl|bosTau2|chr25 (2785943-2786088) | |
| 673-818, gnl|canFam2|chr6 (41931578-41931420) | |
| 673-818, gnl|danRer3|chrNA (220240137-220239989) | |
| 673-818, gnl|echTel1|scaffold_233295 (6559-6715) | |
| 673-818, gnl|fr1|chrUn (217938572-217938425) | |
| 673-818, gnl|galGal2|chr14 (8313752-8313911) | |
| 673-818, gnl|hg17|chr16 (2050662-2050821) | |
| 673-818, gnl|Hg17|chr16 (2050670-2050815) | |
| 673-818, gnl|loxAfr1|scaffold_23244 (34197-34356) | |
| 673-818, gnl|mm7|chr17 (22803507-22803346) | |
| 673-818, gnl|Mm7|chr17 (22803495-22803350) | |
| 673-818, gnl|monDom2|scaffold_5 (121220781-121220622) | |
| 673-818, gnl|oryCun1|scaffold_141687 (4100-4259) | |
| 673-818, gnl|panTro1|chr18_random (8353487-8353328) | |
| 673-818, gnl|rheMac2|chr20 (2050947-2051106) | |
| 673-818, gnl|rn3|chr10 (13872384-13872225) | |
| 673-818, gnl|tetNig1|chr18 (2026991-2026841) | |
| 673-818, gnl|xenTro1|scaffold_12 (1066966-1067114) | |
| 957-1061, gnl|bosTau2|chr25 (2787534-2787638) | |
| 957-1061, gnl|Hg17|chr16 (2052499-2052603) | |
| 957-1061, gnl|Mm7|chr17 (22801988-22801884) |