Non-Coding RNA Search

Ss1.1-Mixc-0032g20.3

Sequence:


               
               CCCACCCTGAACATGGACTCCGACTCCTGCGCCGCCGCTTTCCACCCGGAGGAGTACTCC
CCCGGCTGCAAGAGGCGCAGGACCGTGGAGGATTTCAACAAGTTCTGCACCTTTGTCTTG
GCCTATGCGGGCTACATCCCTTACCCTAAGGAGGAACTCCCTTTGAGGAGTAGCACCAGC
CCTGCCAACAGTACCGCTGGTACCATCGACAGCGACGGCTGGGATGCTGGTTTTGCTGAC
ATCTCGTCCACGGTGCCCTTGCCCGTGTCTGACCGCTGCTTTGGCCACCTGCAGCCTACT
CTCCTGCAGCGAGCCAAGCCCAGTAACTTCCTGCTGGACAGAAAGAAGACCGACAAGCTG
AAGAAGAAGAAGAAGAGGAAGCGCCGGGAAGCGACGCGCCCGGGAAGGAGGGCTACATGG
GGGGCCGTGTCGGGGAGGGCGGTCGGCGTCCCCGGCCTGTGGACGAACAGCCCCGCGTGT
GAGCTTCTTCGCGATGTCAGTCTTTTGCCATAAGTGTCTACAACAACCATCGGAGCTGCC
CCTACCTTCCTGGTCCGCCCTCTCCCCTGCCTGGGGGGCCGCCCGGGGGCCTAGCTGGTG
AGCCCTGTGTTTTTTCTGTTTGTTAAAAGGGACACTGCAGCCGTTTCTCTCTGGAAAGGG
GGTCAGTTGGGGTTCAAGGTGGCCCATGTTCATAACTCAGTTTCCTGTTTTGCACGATGT
AAAAAAACTGTCTTTTTGCACGAAATAGCCCAAAGTATTGGCAGACTTCTGCCCGGGTTC
CCTTTCTCTCCAGTTGGCTTTTGAGGGCCTGGGGGTGGCCCAGGAAGCAGATTTCAAGCA
GCGGCACTTGGATTCTCTCCCGGCCTCTCCCTCTCACGTTATTCTAGTAGCGCCCTTAAG
GGTTAGGCAGTCACGGGGCCAAGTTCCGCTGCCTAGTGGGGTCAGGGAGTGTCGGAGGAA
GGCCTCTCCCGTGGGTTGTTAGTAGTGTGCCCCTCACACAGGCTGGCCTGCTGGTTCCAC
GGGGCAAGGTAGGACCTTTGAAGCCTTTTTTTTTTTTTTTGGTTTGAATTGGTGAGTGAG
TGAGACGTAACACTGGCCTCTAGGAAGGTACCATTGAGCTGGGTGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCCTGAACATGGACTCCGACTCCTGCGCCGCCGCTTTCCACCCGGAGGAGTACTCC
CCCGGCTGCAAGAGGCGCAGGACCGTGGAGGATTTCAACAAGTTCTGCACCTTTGTCTTG
GCCTATGCGGGCTACATCCCTTACCCTAAGGAGGAACTCCCTTTGAGGAGTAGCACCAGC
CCTGCCAACAGTACCGCTGGTACCATCGACAGCGACGGCTGGGATGCTGGTTTTGCTGAC
ATCTCGTCCACGGTGCCCTTGCCCGTGTCTGACCGCTGCTTTGGCCACCTGCAGCCTACT
CTCCTGCAGCGAGCCAAGCCCAGTAACTTCCTGCTGGACAGAAAGAAGACCGACAAGCTG
AAGAAGAAGAAGAAGAGGAAGCGCCGGGAAGCGACGCGCCCGGGAAGGAGGGCTACATGG
GGGGCCGTGTCGGGGAGGGCGGTCGGCGTCCCCGGCCTGTGGACGAACAGCCCCGCGTGT
GAGCTTCTTCGCGATGTCAGTCTTTTGCCATAAGTGTCTACAACAACCATCGGAGCTGCC
CCTACCTTCCTGGTCCGCCCTCTCCCCTGCCTGGGGGGCCGCCCGGGGGCCTAGCTGGTG
AGCCCTGTGTTTTTTCTGTTTGTTAAAAGGGACACTGCAGCCGTTTCTCTCTGGAAAGGG
GGTCAGTTGGGGTTCAAGGTGGCCCATGTTCATAACTCAGTTTCCTGTTTTGCACGATGT
AAAAAAACTGTCTTTTTGCACGAAATAGCCCAAAGTATTGGCAGACTTCTGCCCGGGTTC
CCTTTCTCTCCAGTTGGCTTTTGAGGGCCTGGGGGTGGCCCAGGAAGCAGATTTCAAGCA
GCGGCACTTGGATTCTCTCCCGGCCTCTCCCTCTCACGTTATTCTAGTAGCGCCCTTAAG
GGTTAGGCAGTCACGGGGCCAAGTTCCGCTGCCTAGTGGGGTCAGGGAGTGTCGGAGGAA
GGCCTCTCCCGTGGGTTGTTAGTAGTGTGCCCCTCACACAGGCTGGCCTGCTGGTTCCAC
GGGGCAAGGTAGGACCTTTGAAGCCTTTTTTTTTTTTTTTGGTTTGAATTGGTGAGTGAG
TGAGACGTAACACTGGCCTCTAGGAAGGTACCATTGAGCTGGGTGGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62088668|dbj|BAD92781.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62088668|dbj|BAD92781.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               152-270, - strand, RNAz p=0.632902
               

               
               957-1075, - strand, RNAz p=0.998746

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-270, - strand, RNAz p=0.632902
               

               
               957-1075, - strand, RNAz p=0.998746

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               152-425, gnl|bosTau2|chr16 (34581779-34581505)
               

               
               152-425, gnl|Hg17|chr1 (6614127-6614401)
               

               
               152-425, gnl|Mm7|chr4 (150982136-150981874)
               


               
               591-1120, gnl|bosTau2|chr16 (34579939-34579403)
               

               
               591-1120, gnl|Hg17|chr1 (6616547-6617083)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-425, gnl|bosTau2|chr16 (34581779-34581505)
               

               
               152-425, gnl|Hg17|chr1 (6614127-6614401)
               

               
               152-425, gnl|Mm7|chr4 (150982136-150981874)
               


               
               591-1120, gnl|bosTau2|chr16 (34579939-34579403)
               

               
               591-1120, gnl|Hg17|chr1 (6616547-6617083)

	152-270, - strand, RNAz p=0.632902
	957-1075, - strand, RNAz p=0.998746

	152-425, gnl\|bosTau2\|chr16 (34581779-34581505)
	152-425, gnl\|Hg17\|chr1 (6614127-6614401)
	152-425, gnl\|Mm7\|chr4 (150982136-150981874)

	591-1120, gnl\|bosTau2\|chr16 (34579939-34579403)
	591-1120, gnl\|Hg17\|chr1 (6616547-6617083)