Non-Coding RNA Search

Ss1.1-Mixc-0032k22.5

Sequence:


               
               GGTGGGCAGACCCAAATCATGATGCAAGCCTGCAGTAGCAAGTGTGAAATGAAGCACAAC
CAAATTATGTGAATGGAAGGTAACAAGAAGCCTCTCCAGAACAGCCCTTCCTCCGCACAA
GGGCTGAGAGCTTCACTGGAAAGAAGACATAGCTCATCCAACAAGCCTTCTTTGGCCGTT
CCTCCCAATTCAGTATTCTCCTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGGA
AGTGGAAGCAGCCGTTCTTCCAGCGGAGGTGTTCTAAGCGCATCCTCATTAAGTTCCAAG
TTGTTGAAATCGCCCAAAGAGAAACTGCAGCTCAGGGGGAACAGGCCAATGCATCCCATT
CAGCAAAATAGAGTCCCCCATGGTAGAATGTGAGTATGGCCACAAGGGTTCTTAAAAGCT
CACCTGCCGGAAGTGGAACTGTGTACACAAGTAGCATCTGAGAGTGTCTGTGAATAATGT
GAAAGAGAGCCCGCTTGGGGGAAGATTCAAATATATGTTGCTGTTTCTTTTTGTTTCCCT
ATTATATCTTGGGAGACTTTACAGAGTCACAATGTCAATAATAATAAGGCTGATAATACC
TATTTATCGACCCTTTCTTGTGTGCCAGCAGCTATTGAAATTTGGCTCTCTGTGTATTGT
CATTTTCTTACGACAACAACCCTCTGAAATAGTTACTGTTGTTCTCCCCACTTTCCAGAT
AAGGAGAGGGAAGTGTAATAAGATTGAAGAACTTTAGCCAAGGGGCCCTGACGTCAAACA
GGCCTGTGTCCAAATCCCCATCTGTCTTCCTAGCGAAGGGACCTTGGACAAGGCCCTCTT
GCTCTCTGAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGCAGACCCAAATCATGATGCAAGCCTGCAGTAGCAAGTGTGAAATGAAGCACAAC
CAAATTATGTGAATGGAAGGTAACAAGAAGCCTCTCCAGAACAGCCCTTCCTCCGCACAA
GGGCTGAGAGCTTCACTGGAAAGAAGACATAGCTCATCCAACAAGCCTTCTTTGGCCGTT
CCTCCCAATTCAGTATTCTCCTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGGA
AGTGGAAGCAGCCGTTCTTCCAGCGGAGGTGTTCTAAGCGCATCCTCATTAAGTTCCAAG
TTGTTGAAATCGCCCAAAGAGAAACTGCAGCTCAGGGGGAACAGGCCAATGCATCCCATT
CAGCAAAATAGAGTCCCCCATGGTAGAATGTGAGTATGGCCACAAGGGTTCTTAAAAGCT
CACCTGCCGGAAGTGGAACTGTGTACACAAGTAGCATCTGAGAGTGTCTGTGAATAATGT
GAAAGAGAGCCCGCTTGGGGGAAGATTCAAATATATGTTGCTGTTTCTTTTTGTTTCCCT
ATTATATCTTGGGAGACTTTACAGAGTCACAATGTCAATAATAATAAGGCTGATAATACC
TATTTATCGACCCTTTCTTGTGTGCCAGCAGCTATTGAAATTTGGCTCTCTGTGTATTGT
CATTTTCTTACGACAACAACCCTCTGAAATAGTTACTGTTGTTCTCCCCACTTTCCAGAT
AAGGAGAGGGAAGTGTAATAAGATTGAAGAACTTTAGCCAAGGGGCCCTGACGTCAAACA
GGCCTGTGTCCAAATCCCCATCTGTCTTCCTAGCGAAGGGACCTTGGACAAGGCCCTCTT
GCTCTCTGAGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               139-257, - strand, RNAz p=0.52547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-257, - strand, RNAz p=0.52547

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-132, gnl|bosTau2|chr22 (28600261-28600392)
               

               
               1-132, gnl|Hg17|chr3 (63928556-63928684)
               

               
               1-132, gnl|Mm7|chr14 (11886678-11886796)
               


               
               139-851, gnl|bosTau2|chr22 (28612210-28612911)
               

               
               139-851, gnl|Hg17|chr3 (63940630-63941336)
               

               
               139-851, gnl|Mm7|chr14 (11906162-11906808)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-132, gnl|bosTau2|chr22 (28600261-28600392)
               

               
               1-132, gnl|Hg17|chr3 (63928556-63928684)
               

               
               1-132, gnl|Mm7|chr14 (11886678-11886796)
               


               
               139-851, gnl|bosTau2|chr22 (28612210-28612911)
               

               
               139-851, gnl|Hg17|chr3 (63940630-63941336)
               

               
               139-851, gnl|Mm7|chr14 (11906162-11906808)

	1-132, gnl\|bosTau2\|chr22 (28600261-28600392)
	1-132, gnl\|Hg17\|chr3 (63928556-63928684)
	1-132, gnl\|Mm7\|chr14 (11886678-11886796)

	139-851, gnl\|bosTau2\|chr22 (28612210-28612911)
	139-851, gnl\|Hg17\|chr3 (63940630-63941336)
	139-851, gnl\|Mm7\|chr14 (11906162-11906808)