Non-Coding RNA Search

Ss1.1-Mixc-0032n08.3

Sequence:


               
               GCGGTTGCAGGCGCTCCTGGAGGACCTGCTGGACGCCCAAAAGGTTCTCCAGGACGTGGA
TGTTCTTTCGGCCCTGGCCCTGCTGCTGCCTCAGGGCGCCTGCGCCGGCCGGGCTCCTGG
GCCCCCAGGCAGCGGCCCTGGCGGGGCGGCCAATGGCACAGGGGCTGGAGGGGGCACAGG
CTCCAACACCACGGCCGAAGAGGGTGCCCCATCCGCTGCAGCCCCAGCCTCCTCGGACGC
GCTGCAGGGCCAGTGCTCTGCCTTCGTGCAGCTCTGGGCCGGCCTGCAGCCCATCCTGTG
CGGCAACAACCGCACCATCGAGCCGGAGGCGCTGCGGAGGGGCAACATGAGCTCCCTGGG
CTTCACGAGCAAGGAGCAGCGGAACCTGGGTCTGCTCGTGCACCTCATGACCAGCAACCC
CAAGATCCTCTATGCGCCAGCGGGCTCTGAGGCGGATCGCGTCATTCTCAAGGCCAATGA
GACCTTTGCGCTCGTAGGCAACGTGACGCACTACGCCCAGGTCTGGCTCAACATCTCGGC
GGAGATCCGTGGCTACCTGGAGCAGGGCCGGCTGCAGCAACACCTGCACTGGCTGCAGCA
GCAGCTAGACACCATCGACAACGCGGCCTGCGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTTGCAGGCGCTCCTGGAGGACCTGCTGGACGCCCAAAAGGTTCTCCAGGACGTGGA
TGTTCTTTCGGCCCTGGCCCTGCTGCTGCCTCAGGGCGCCTGCGCCGGCCGGGCTCCTGG
GCCCCCAGGCAGCGGCCCTGGCGGGGCGGCCAATGGCACAGGGGCTGGAGGGGGCACAGG
CTCCAACACCACGGCCGAAGAGGGTGCCCCATCCGCTGCAGCCCCAGCCTCCTCGGACGC
GCTGCAGGGCCAGTGCTCTGCCTTCGTGCAGCTCTGGGCCGGCCTGCAGCCCATCCTGTG
CGGCAACAACCGCACCATCGAGCCGGAGGCGCTGCGGAGGGGCAACATGAGCTCCCTGGG
CTTCACGAGCAAGGAGCAGCGGAACCTGGGTCTGCTCGTGCACCTCATGACCAGCAACCC
CAAGATCCTCTATGCGCCAGCGGGCTCTGAGGCGGATCGCGTCATTCTCAAGGCCAATGA
GACCTTTGCGCTCGTAGGCAACGTGACGCACTACGCCCAGGTCTGGCTCAACATCTCGGC
GGAGATCCGTGGCTACCTGGAGCAGGGCCGGCTGCAGCAACACCTGCACTGGCTGCAGCA
GCAGCTAGACACCATCGACAACGCGGCCTGCGGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.831625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.831625

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               108-308, - strand, RNAmicro p=0.993812
               

               
               101-225, + strand, RNAmicro p=0.982661

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               108-308, - strand, RNAmicro p=0.993812
               

               
               101-225, + strand, RNAmicro p=0.982661

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF178941, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF178941, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-312, gnl|bosTau2|chr11 (86341271-86340960)
               

               
               1-312, gnl|Hg17|chr9 (137191294-137190983)
               

               
               1-312, gnl|Mm7|chr2 (25442257-25442568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-312, gnl|bosTau2|chr11 (86341271-86340960)
               

               
               1-312, gnl|Hg17|chr9 (137191294-137190983)
               

               
               1-312, gnl|Mm7|chr2 (25442257-25442568)

	108-308, - strand, RNAmicro p=0.993812
	101-225, + strand, RNAmicro p=0.982661

	1-312, gnl\|bosTau2\|chr11 (86341271-86340960)
	1-312, gnl\|Hg17\|chr9 (137191294-137190983)
	1-312, gnl\|Mm7\|chr2 (25442257-25442568)