Non-Coding RNA Search

Ss1.1-Mixc-0033c24.3

Sequence:


               
               TGCCGCCGCCGCCGCTTCCTCCAGCCGCCCACTCGGCTCCGGCGCGGGCCCGGGCCCGAC
GGGGGCGGCTCCGGTCTCTGCCCCCGCCCCCGGGCCCGGCCCGGCTGCCAAGGGAGGCGG
CGGCGGAGGCAGCCCCGGCCCCACGGCGGGGCCGGAGCCCCTGAGCCTGCCGGGGATCCT
ACACTTTATCCAGCACGAGTGGGCGCGCTTCGAAGCGGAGAAGGCCCGCTGGGAGGCGGA
GCGCGCCGAGTTACAGGCTCAGGTGGCCTTCCTCCAGGGAGAAAGGAAGGGGCAAGAGAA
TCTCAAGACAGACCTGGTGCGGCGGATCAAGATGTTAGAATATGCACTGAAGCAGGAGAG
GGCCAAATATCATAAATTGAAATTTGGGACAGACCTGAACCAGGGAGAGAAGAAACCCGA
ACTGTCAGAACAAGTCTCCAATGGCCCCGTGGAGTCGGTCACCCTGGAGAACAGCCCGCT
GGTGTGGAAGGAGGGGCGGCAGCTTCTCCGACAGTACCTGGAAGAGGTGGGCTACACAGA
CACCATCCTGGACATGCGGTCCAAGCGCGTGCGGTCCCTCCTGGGCCGTTCGTTGGAGCT
CAACGGGGCCGTGGAGCCCAGTGAAGGGGGCCTCAGGACTACACCGGGCCCTGGGGGACT
CAGTGGCGGTGAGTCGCTGCTGGTGAAACAGATTGAGGAGCAGATCAAGAGGAACGCAGC
CGGCAAAGATGGCAAAGAGCGCCTGGGTGGCTCAGTGCTGGAGCAGATCCCCTTCCTGCA
GAACTGCGAGGATGAGGACAGTGACGAGGACGACGAGCTGGACAGCGTGCAGCACAAGAA
GCAGCGGGTGAAGCTGCCGTCCAAGGCCCTGAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGCCGCCGCCGCTTCCTCCAGCCGCCCACTCGGCTCCGGCGCGGGCCCGGGCCCGAC
GGGGGCGGCTCCGGTCTCTGCCCCCGCCCCCGGGCCCGGCCCGGCTGCCAAGGGAGGCGG
CGGCGGAGGCAGCCCCGGCCCCACGGCGGGGCCGGAGCCCCTGAGCCTGCCGGGGATCCT
ACACTTTATCCAGCACGAGTGGGCGCGCTTCGAAGCGGAGAAGGCCCGCTGGGAGGCGGA
GCGCGCCGAGTTACAGGCTCAGGTGGCCTTCCTCCAGGGAGAAAGGAAGGGGCAAGAGAA
TCTCAAGACAGACCTGGTGCGGCGGATCAAGATGTTAGAATATGCACTGAAGCAGGAGAG
GGCCAAATATCATAAATTGAAATTTGGGACAGACCTGAACCAGGGAGAGAAGAAACCCGA
ACTGTCAGAACAAGTCTCCAATGGCCCCGTGGAGTCGGTCACCCTGGAGAACAGCCCGCT
GGTGTGGAAGGAGGGGCGGCAGCTTCTCCGACAGTACCTGGAAGAGGTGGGCTACACAGA
CACCATCCTGGACATGCGGTCCAAGCGCGTGCGGTCCCTCCTGGGCCGTTCGTTGGAGCT
CAACGGGGCCGTGGAGCCCAGTGAAGGGGGCCTCAGGACTACACCGGGCCCTGGGGGACT
CAGTGGCGGTGAGTCGCTGCTGGTGAAACAGATTGAGGAGCAGATCAAGAGGAACGCAGC
CGGCAAAGATGGCAAAGAGCGCCTGGGTGGCTCAGTGCTGGAGCAGATCCCCTTCCTGCA
GAACTGCGAGGATGAGGACAGTGACGAGGACGACGAGCTGGACAGCGTGCAGCACAAGAA
GCAGCGGGTGAAGCTGCCGTCCAAGGCCCTGAAACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53TQ8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53TQ8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               553-712, + strand, RNAz p=0.946541

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               553-712, + strand, RNAz p=0.946541

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               576-661, + strand, RNAmicro p=0.952991

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               576-661, + strand, RNAmicro p=0.952991

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-174, gnl|bosTau2|chr18 (49703255-49703428)
               

               
               4-174, gnl|Hg17|chr19 (51941498-51941328)
               

               
               4-174, gnl|Mm7|chr7 (14580008-14580178)
               


               
               514-712, gnl|bosTau2|chr18 (49713704-49713902)
               

               
               514-712, gnl|Hg17|chr19 (51928333-51928135)
               

               
               514-712, gnl|Mm7|chr7 (14590089-14590287)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-174, gnl|bosTau2|chr18 (49703255-49703428)
               

               
               4-174, gnl|Hg17|chr19 (51941498-51941328)
               

               
               4-174, gnl|Mm7|chr7 (14580008-14580178)
               


               
               514-712, gnl|bosTau2|chr18 (49713704-49713902)
               

               
               514-712, gnl|Hg17|chr19 (51928333-51928135)
               

               
               514-712, gnl|Mm7|chr7 (14590089-14590287)

	4-174, gnl\|bosTau2\|chr18 (49703255-49703428)
	4-174, gnl\|Hg17\|chr19 (51941498-51941328)
	4-174, gnl\|Mm7\|chr7 (14580008-14580178)

	514-712, gnl\|bosTau2\|chr18 (49713704-49713902)
	514-712, gnl\|Hg17\|chr19 (51928333-51928135)
	514-712, gnl\|Mm7\|chr7 (14590089-14590287)