Non-Coding RNA Search

Ss1.1-Mixc-0033f03.3

Sequence:


               
               TAAAAAATGCCCAATTGTGTCCAAATAAAGGATATCTCTGTATGACAGTTTTCACGGTAG
CTCTGTGGACAGTGTGTGTTATTTCCATTTTGACTCTCTGCAACAGATAGACCCCAAAAA
TCAGGGCCATCTTTTGCAAGGGAGAGATGGCGATATTTTACTGAACTCACTTTCAAAACC
CTTGAGTGAATCTCTATCCGTGCTTCATGATTTATAATACCATACCTCACAGCAGGTGCA
ATAATGAAAATCTTTGCAAGTGTGTAATTTTGAAACTACACTTCTGAGCAATTGCTATTG
AACTTTGAGCAATTGCTATTTGCCCATCTTGCCTCTAAAATATTCCTGTTACTCCTATAG
AAATCTAATCTACTACCTATATAGTTAACATTCTTTTCTTTCTTTTTTGCCAAATATTTC
ATGATAAATCTCCTAATTACAAAGATTCTTCTATTTAGGATTAAACTGAAAATATTGTGT
TAGCAAAAGTCCTGGGACTCTCTAGATGCCCACACATGGATAAATCTGATTTGGAGAGAG
AAAACGAGAATCTTAAGTAAAAGGTGTGACATTTTCAAATAGTTTTTAGAAGCAGAAGAC
AGCTTTCTGTTACGTCCTTTAGCTGCCAGAGCAGATACACTTCAGTAAAAGAGGCTGCTC
ATTGTAACACAGAGCCCAGGGAAATTATTTCTTGGAGCCCTATTCACCCTGCAGTACATG
ACGAGAAGATGAAGAGCATCAACAAAGAATTTCAGTTCAGCTAGTTAGAAAAATAAGCTA
CTTACTGAGATCTGTTTCTTCTACTGCGTATTTGCTTTTGATGGACAACTTCGTTCAGAA
GTGAAACCATCAACCAGAACTCGGCCTGTTAAGAAGAAAAGGGTTTGGGTTATTTTTTTA
AATGTAAATAAACTTCTACAAAAAAGTCAATAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAAATGCCCAATTGTGTCCAAATAAAGGATATCTCTGTATGACAGTTTTCACGGTAG
CTCTGTGGACAGTGTGTGTTATTTCCATTTTGACTCTCTGCAACAGATAGACCCCAAAAA
TCAGGGCCATCTTTTGCAAGGGAGAGATGGCGATATTTTACTGAACTCACTTTCAAAACC
CTTGAGTGAATCTCTATCCGTGCTTCATGATTTATAATACCATACCTCACAGCAGGTGCA
ATAATGAAAATCTTTGCAAGTGTGTAATTTTGAAACTACACTTCTGAGCAATTGCTATTG
AACTTTGAGCAATTGCTATTTGCCCATCTTGCCTCTAAAATATTCCTGTTACTCCTATAG
AAATCTAATCTACTACCTATATAGTTAACATTCTTTTCTTTCTTTTTTGCCAAATATTTC
ATGATAAATCTCCTAATTACAAAGATTCTTCTATTTAGGATTAAACTGAAAATATTGTGT
TAGCAAAAGTCCTGGGACTCTCTAGATGCCCACACATGGATAAATCTGATTTGGAGAGAG
AAAACGAGAATCTTAAGTAAAAGGTGTGACATTTTCAAATAGTTTTTAGAAGCAGAAGAC
AGCTTTCTGTTACGTCCTTTAGCTGCCAGAGCAGATACACTTCAGTAAAAGAGGCTGCTC
ATTGTAACACAGAGCCCAGGGAAATTATTTCTTGGAGCCCTATTCACCCTGCAGTACATG
ACGAGAAGATGAAGAGCATCAACAAAGAATTTCAGTTCAGCTAGTTAGAAAAATAAGCTA
CTTACTGAGATCTGTTTCTTCTACTGCGTATTTGCTTTTGATGGACAACTTCGTTCAGAA
GTGAAACCATCAACCAGAACTCGGCCTGTTAAGAAGAAAAGGGTTTGGGTTATTTTTTTA
AATGTAAATAAACTTCTACAAAAAAGTCAATAATAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-232, + strand, RNAz p=0.990952
               

               
               732-891, - strand, RNAz p=0.974629

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-232, + strand, RNAz p=0.990952
               

               
               732-891, - strand, RNAz p=0.974629

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-313, gnl|bosTau2|chr22 (30100349-30100668)
               

               
               1-313, gnl|Hg17|chr3 (62254687-62254989)
               

               
               1-313, gnl|Mm7|chr14 (10054377-10054665)
               


               
               332-929, gnl|bosTau2|chr22 (30100636-30101257)
               

               
               332-929, gnl|Hg17|chr3 (62254957-62255554)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-313, gnl|bosTau2|chr22 (30100349-30100668)
               

               
               1-313, gnl|Hg17|chr3 (62254687-62254989)
               

               
               1-313, gnl|Mm7|chr14 (10054377-10054665)
               


               
               332-929, gnl|bosTau2|chr22 (30100636-30101257)
               

               
               332-929, gnl|Hg17|chr3 (62254957-62255554)

	80-232, + strand, RNAz p=0.990952
	732-891, - strand, RNAz p=0.974629

	1-313, gnl\|bosTau2\|chr22 (30100349-30100668)
	1-313, gnl\|Hg17\|chr3 (62254687-62254989)
	1-313, gnl\|Mm7\|chr14 (10054377-10054665)

	332-929, gnl\|bosTau2\|chr22 (30100636-30101257)
	332-929, gnl\|Hg17\|chr3 (62254957-62255554)