Non-Coding RNA Search

Ss1.1-Mixc-0033i11.3

Sequence:


               
               GATGAGATAAGGGGTGATATCTAAAAAGATCCTGACCTGCTACACTTTTCTGATAATCGT
GCAATTACCAAGCCAAACCTTCTCTACCAGCTTTTTACTTGCAAGCTCCCAAGCAGAATT
ATTTCCTTTGTCCTCCAGTTGAGATGTGATGTCAAGAAATGCTCTGGAGTCCAGTCTGTG
TTCAAACGCTCGCTCTGTGATATACCAGCTGAACTATAAGCTTGGGTAATGGGTCATGTG
ACTCAGGGATAAATTTGGCTGTTGCTGGTTGAGCAAGCCAGGGAGCACCAGACACCTCGC
CCTGGACTCGGAGGAGCCAGAGCTGGAAAGGCACATGAATCTGTTTGCCTTCCTGGAGCA
TCGCTCTCAACCACAGAAATTCAAAGAAAGCTCTTTGCTAGGAAAGTCCACCCCAACATC
TGTGCCTGGCTACGCTGTCCTTACCCTCCAGACCCCAGTCATGTTGTGGCAGAAGAGTAG
AGTTTGGGAGGCACCTGAGATAAACTGAGAAACTCGGGACCTTCTCATCAGTGGGTGCTT
TTAGGCTCACCTGGAGTCATTAGAAATGGGACTAATGCAGACTAATAAGGTTCGTATCTG
ACTTTTTTTTTTAGGGGAGAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAGATAAGGGGTGATATCTAAAAAGATCCTGACCTGCTACACTTTTCTGATAATCGT
GCAATTACCAAGCCAAACCTTCTCTACCAGCTTTTTACTTGCAAGCTCCCAAGCAGAATT
ATTTCCTTTGTCCTCCAGTTGAGATGTGATGTCAAGAAATGCTCTGGAGTCCAGTCTGTG
TTCAAACGCTCGCTCTGTGATATACCAGCTGAACTATAAGCTTGGGTAATGGGTCATGTG
ACTCAGGGATAAATTTGGCTGTTGCTGGTTGAGCAAGCCAGGGAGCACCAGACACCTCGC
CCTGGACTCGGAGGAGCCAGAGCTGGAAAGGCACATGAATCTGTTTGCCTTCCTGGAGCA
TCGCTCTCAACCACAGAAATTCAAAGAAAGCTCTTTGCTAGGAAAGTCCACCCCAACATC
TGTGCCTGGCTACGCTGTCCTTACCCTCCAGACCCCAGTCATGTTGTGGCAGAAGAGTAG
AGTTTGGGAGGCACCTGAGATAAACTGAGAAACTCGGGACCTTCTCATCAGTGGGTGCTT
TTAGGCTCACCTGGAGTCATTAGAAATGGGACTAATGCAGACTAATAAGGTTCGTATCTG
ACTTTTTTTTTTAGGGGAGAAGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               228-326, - strand, RNAz p=0.982451
               

               
               447-603, - strand, RNAz p=0.983642

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-326, - strand, RNAz p=0.982451
               

               
               447-603, - strand, RNAz p=0.983642

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               546-642, - strand, RNAmicro p=0.981266

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               546-642, - strand, RNAmicro p=0.981266

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-603, gnl|bosTau2|chr4 (37959584-37958989)
               

               
               11-603, gnl|Hg17|chr7 (28289145-28288482)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-603, gnl|bosTau2|chr4 (37959584-37958989)
               

               
               11-603, gnl|Hg17|chr7 (28289145-28288482)

	228-326, - strand, RNAz p=0.982451
	447-603, - strand, RNAz p=0.983642

	11-603, gnl\|bosTau2\|chr4 (37959584-37958989)
	11-603, gnl\|Hg17\|chr7 (28289145-28288482)